Prevotella melaninogenica F0301 |
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Putative Prevotella melaninogenica F0301 RM systems
Ref: Johnston,C.D. et al. unpublished
REBASE ref # 31062
| Sequence length: | GenBank #: | |
| chromosome 1: | 1,863,200 bp | CP072349 |
| chromosome 2: | 1,355,281 bp | CP072350 |
REBASE acronym: Pme0301
Org_num: 48659
All begin J5A54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2355 | 72 aa hypothetical protein | |||
| 2360 | M | M.Pme1567ORF5960P (99% identity) | GTANNNNNNNTGCT | M.Pme0301I |
| 2365 | S | S.Pme1567ORF5960P (58% identity) | GTANNNNNNNTGCT | S.Pme0301I |
| 2370 | R | Pme1567ORF5960P (97% identity) | GTANNNNNNNTGCT | Pme0301IP |
| 2375 | 199 aa hypothetical protein | |||
| chromosome 2 | ||||
| 8885 | R | Pme0300IIIP (99% identity) | GAANNNNNNNNTTC | Pme0301IIIP |
| 8890 | M | M.Pme0300III (98% identity) | GAANNNNNNNNTTC | M.Pme0301III |
| 8895 | S | S1.Psc361BI (67% identity) | GAANNNNNNNNTTC | S1.Pme0301III |
| 8900 | S | S2.Pme0300IIIP (84% identity) | S2.Pme0301IIIP | |
| ??? | S | S3.Pme0300IIIP (94% identity) | S3.Pme0301IIIP | |
| 8910 | DUF2188 domain-containing protein | |||
| 8915 | S | S3.Pme760ORF3585P (100% identity) | S4.Pme0301IIIP | |
| 8920 | peptidase M15 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1570 | 109 aa hypothetical protein | |||
| 1575 | M | M.Pme0299ORF6315P (85% identity) | M.Pme0301ORF1575P | |
| 1580 | IS1634 family transposase | |||
| 3070 | DEAD/DEAH box helicase | |||
| 3075 | M | M.Pme0300ORF4950P (96% identity) | M.Pme0301ORF3075P | |
| 3080 | 192 aa hypothetical protein | |||
| chromosome 2 | ||||
| 8735 | class I SAM-dependent DNA methyltransferase | |||
| 8740 | RM | Pin17FIII (90% identity) | GGYGAB | Pme0301IV |
| 8745 | SNF2/RAD54 family helicase | |||
| 8970 | 313 aa hypothetical protein | |||
| 8975 | M | M.Pme760ORF3460P (100% identity) | M.Pme0301ORF8975P | |
| 8980 | R | Pme760ORF3460P (98% identity) | Pme0301ORF8975P | |
| 8985 | RNA polymerase sigma factor RpoD/SigA | |||
| 9060 | DGQHR domain-containing protein | |||
| 9065 | M | M.Pme0299I (99% identity) | GATC | M.Pme0301II |
| 9070 | rubrerythrin family protein | |||
| 10205 | ATP-binding protein | |||
| 10210 | R | Pme0695ORF10870P (99% identity) | Pme0301ORF10215P | |
| 10215 | M | M.Pme0695ORF10870P (99% identity) | M.Pme0301ORF10215P | |
| 10220 | helix-turn-helix transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 9220 | 104 aa hypothetical protein | |||
| 9225 | R | Pme0516McrBP (94% identity) | Pme0301McrBP | |
| 9230 | R | Pme0299McrCP (97% identity) | Pme0301McrCP | |
| 9235 | SusF/SusE family outer membrane protein | |||