Escherichia coli C5 |
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Putative Escherichia coli C5 RM systems
Ref: Himpsl,S. et al. unpublished
REBASE ref # 31815
| Sequence length: | GenBank #: | |
| Chromosome: | 5,040,950 bp | CP072911 |
| plasmid unnamed: | 122,046 bp | CP072912 |
REBASE acronym: Eco700973
Org_num: 46536
All begin J8Z52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3680 | endoribonuclease SymE | |||
| 3685 | S | S.EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | S.Eco700973ORF3690P |
| 3690 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.Eco700973ORF3690P |
| 3695 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco700973ORF3690P |
| 3700 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3145 | 527 aa hypothetical protein | |||
| 3150 | R | EcosS3ORF15775P (100% identity) | Eco700973ORF3155P | |
| 3155 | M | M.EcoEC01ORFHP (95% identity) | M.Eco700973ORF3155P | |
| 3160 | conjugal transfer protein TraG N-terminal | |||
| 3440 | 59 aa hypothetical protein | |||
| 3445 | R | Ecoi127aORF4076P (100% identity) | Eco700973ORF3445P | |
| 3450 | HNH endonuclease | |||
| 11105 | TrmB family transcriptional regulator | |||
| 11110 | M | M.SboBSORF1444P (100% identity) | A | M.Eco700973ORF11110P |
| 11130 | DUF1737 domain-containing protein | |||
| 14370 | drug/metabolite exporter YedA | |||
| 14375 | V | V.SflC32DcmP (74% identity) | V.Eco700973DcmP | |
| 14380 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco700973DcmP |
| 14385 | phosphohydrolase | |||
| 18370 | LexA family transcriptional regulator | |||
| 18375 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.Eco700973ORF18375P |
| 18380 | PerC family transcriptional regulator | |||
| 21700 | DNA-binding transcriptional regulator Fis | |||
| ??? | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco700973ORF21705P |
| 21710 | DUF2556 family protein | |||
| 22300 | ribulose-phosphate 3-epimerase | |||
| 22305 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco700973DamP |
| 22310 | cell division protein DamX | |||
| plasmid unnamed | ||||
| 24760 | 73 aa hypothetical protein | |||
| 24765 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco700973ORF24765P |
| 24770 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3695 | type I restriction-modification system | |||
| 3700 | R | EcosS1MrrP (100% identity) | Eco700973MrrP | |
| 3705 | GTPase | |||
| 18165 | DinI-like family protein | |||
| 18170 | R | EspFAAGmrSDP (100% identity) | Eco700973GmrSDP | |
| 18175 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10245 | recombination protein NinB | |||
| 10250 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco700973ORF10250P |
| 10255 | NinE family protein | |||