Helicobacter pylori MT5105 |
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Putative Helicobacter pylori MT5105 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,667,928 bp
GenBank #: CP071977
REBASE acronym: HpyMT5105
Org_num: 48213
All begin J5D22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2110 | RNA degradosome polyphosphate kinase | |||
| 2120 | S | S.HpyMT5125VII (98% identity) | CTANNNNNNTC | S.HpyMT5105ORF2125P |
| 2125 | M | M.HpyMT5135ORF2140P (98% identity) | CTANNNNNNTC | M.HpyMT5105ORF2125P |
| 2130 | R | HpyCOL120ORF2295P (93% identity) | CTANNNNNNTC | HpyMT5105ORF2125P |
| 2135 | motility associated factor glycosyltransferase | |||
| 3805 | 53 aa hypothetical protein | |||
| 3810 | S | S.HpyH026ORF4130P (96% identity) | S.HpyMT5105ORF3810P | |
| 3815 | cadmium-translocating P-type ATPase | |||
| 4090 | hydroxyethylthiazole kinase | |||
| 4095 | R | HpyMT5135ORF4055P (97% identity) | HpyMT5105ORF4105P | |
| 4100 | S | S.HpyBR1XX (65% identity) | S.HpyMT5105ORF4105P | |
| 4105 | M | M.HpyGH9VII (98% identity) | M.HpyMT5105ORF4105P | |
| 4110 | phosphatase PAP2 family protein | |||
| 6805 | M48 family metallopeptidase | |||
| 6810 | R | HpyBR1ORF6780P (96% identity) | CRTANNNNNNNTC | HpyMT5105VP |
| 6815 | M | M.HpySP320VII (96% identity) | CRTANNNNNNNTC | M.HpyMT5105V |
| 6820 | S | S.HpyC010V (97% identity) | CRTANNNNNNNTC | S.HpyMT5105V |
| 6825 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine/peptidylarginine deiminase | |||
| 255 | M | M1.HpyCOL208VI (100% identity) | CCTC | M1.HpyMT5105III |
| 260 | M | M2.HpyNG19IVP (100% identity) | CCTC | M2.HpyMT5105IIIP |
| 265 | restriction endonuclease | |||
| 260 | DNA cytosine methyltransferase | |||
| 265 | R | HpyCOL208VIIP (100% identity) | CCTTC | HpyMT5105IVP |
| 270 | M | M.HpyNG19V (100% identity) | CCTTC | M.HpyMT5105IV |
| 275 | sodium/proline symporter PutP | |||
| 455 | ACP S-malonyltransferase | |||
| ??? | R | HpyU433VIIP (97% identity) | GATC | HpyMT5105VIIIP |
| 470 | M | M.HpyDO6VI (98% identity) | GATC | M.HpyMT5105VIII |
| 475 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy5004ORF6605P (93% identity) | TCGA | M.HpyMT5105X |
| 1265 | 198 aa hypothetical protein | |||
| 1260 | site-specific DNA-methyltransferase | |||
| ??? | R | HpyU406IIIP (100% identity) | CCGG | HpyMT5105ORF1270P |
| 1270 | M | M.HpyU434IV (100% identity) | CCGG | M.HpyMT5105ORF1270P |
| 1275 | AAA family ATPase | |||
| 2195 | Hop family outer membrane protein HopJ/HopK | |||
| 2200 | M | M.HpyCOL119III (96% identity) | ATTAAT | M.HpyMT5105ORF2200P |
| 2205 | glycosyltransferase family 9 protein | |||
| 2210 | translational GTPase TypA | |||
| 2215 | M | M.HpyMT5124II (100% identity) | ACNGT | M.HpyMT5105XIV |
| 2220 | R | Hpy5024ORF8365P (100% identity) | ACNGT | HpyMT5105XIVP |
| 2225 | DNA cytosine methyltransferase | |||
| 2220 | GIY-YIG nuclease family protein | |||
| 2225 | M | M.HpyCOL6ORF2255P (99% identity) | ACGT | M.HpyMT5105ORF2225P |
| ??? | R | HpyU104ORF2215P (96% identity) | ACGT | HpyMT5105ORF2225P |
| 2235 | catalase | |||
| 2325 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.Hpy5056ORF8380P (100% identity) | GTAC | M.HpyMT5105IX |
| 2335 | R | Hpy9310ORFD1P (94% identity) | GTAC | HpyMT5105IXP |
| 2340 | peptidoglycan DD-metalloendopeptidase family | |||
| 3145 | (Fe-S)-binding protein | |||
| 3150 | RM | HpySP503ORF3005P (84% identity) | HpyMT5105ORF3150P | |
| 3155 | IS607 family transposase | |||
| 3265 | 3-5 exonuclease | |||
| 3270 | M | M.HpyU306III (100% identity) | CCNNGG | M.HpyMT5105II |
| 3275 | R | HpyCOL211VP (100% identity) | CCNNGG | HpyMT5105IIP |
| 3280 | acetone carboxylase subunit gamma | |||
| 4385 | flagellar hook protein FlgE | |||
| 4390 | R | Hpy5006ORF5255P (96% identity) | GTNNAC | HpyMT5105ORF4395P |
| ??? | M | M.Hpy1145ORF5160P (98% identity) | GTNNAC | M.HpyMT5105ORF4395P |
| 4400 | ATP-dependent helicase | |||
| 5260 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5265 | M | M.HpyU301XII (98% identity) | TCNNGA | M.HpyMT5105XII |
| 5270 | R | HpyDO11ORF5180P (98% identity) | TCNNGA | HpyMT5105XIIP |
| 5275 | Laminin subunit alpha-2 precursor | |||
| 5455 | 144 aa hypothetical protein | |||
| 5460 | M | M.Hpy5056ORF3135P (97% identity) | GCGC | M.HpyMT5105ORF5460P |
| 5465 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5735 | Hop family adhesin HopQ | |||
| 5740 | M | M.HpyGH9XIII (100% identity) | TCNGA | M.HpyMT5105XI |
| 5745 | R | HpyU408XP (99% identity) | TCNGA | HpyMT5105XIP |
| 5750 | purine-nucleoside phosphorylase | |||
| 5915 | HAD family hydrolase | |||
| 5920 | M | M.Hpy5005ORF4190P (100% identity) | CATG | M.HpyMT5105I |
| 5925 | IceA2 protein | |||
| 6635 | S41 family peptidase | |||
| 6640 | R | HpyCOL208IXP (99% identity) | GANTC | HpyMT5105VIIP |
| 6645 | M | M.HpyU406VI (98% identity) | GANTC | M.HpyMT5105VII |
| 6650 | DNA methyltransferase | |||
| 6655 | DNA methyltransferase | |||
| 6660 | RM | HpyCOL208ORF6675P (69% identity) | HpyMT5105ORF6660P | |
| 6665 | carboxylating nicotinate-nucleotide | |||
| 6715 | copper response regulator transcription factor | |||
| 6720 | R | HpyMT5124XIP (100% identity) | TGCA | HpyMT5105XIIIP |
| 6725 | M | M.HpyMT5124XI (100% identity) | TGCA | M.HpyMT5105XIII |
| 6730 | 67 aa hypothetical protein | |||
| 6895 | 95 aa hypothetical protein | |||
| 6900 | RM | HpyR07XII (89% identity) | HpyMT5105ORF6900P | |
| 6905 | 176 aa hypothetical protein | |||
| 6980 | outer membrane protein | |||
| 6985 | R | HpyCOL306ORF7350P (98% identity) | HpyMT5105ORF6985P | |
| 6990 | DNA cytosine methyltransferase | |||
| 6985 | AlwI family type II restriction endonuclease | |||
| 6990 | M | M.HpyUM067ORF4540P (100% identity) | M.HpyMT5105ORF6990P | |
| 6995 | LptF/LptG family permease | |||
| 7120 | ComF family protein | |||
| 7125 | RM | HpySP202ORF7230P (97% identity) | CYANNNNNNTTC | HpyMT5105XV |
| 7130 | S | S.HpyU415ORF7025P (97% identity) | CYANNNNNNTTC | S.HpyMT5105XV |
| 7135 | DNA polymerase I | |||
| 7400 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyMT5125IXP (100% identity) | GAATTC | HpyMT5105VIP |
| 7410 | M | M.HpyU003VII (100% identity) | GAATTC | M.HpyMT5105VI |
| 7415 | glycosyltransferase family 8 protein | |||
| 7555 | site-specific DNA-methyltransferase | |||
| 7560 | M | M.HpyMT5124ORF7530P (100% identity) | M.HpyMT5105ORF7560P | |
| 7565 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6875 | ATP-dependent DNA helicase RecG | |||
| 6880 | M | M.HpyCOL306ORF7445P (97% identity) | M.HpyMT5105ORF6880P | |
| 6885 | R | HpyGH9ORF6900P (96% identity) | HpyMT5105ORF6880P | |
| 6890 | 716 aa hypothetical protein | |||
| 7475 | biotin synthase | |||
| 7480 | R | HpyCOL208ORF7510P (97% identity) | HpyMT5105ORF7485P | |
| 7485 | M | M.Hpy5024ORF9310P (98% identity) | M.HpyMT5105ORF7485P | |
| 7490 | DNA/RNA non-specific endonuclease | |||
| 7540 | rod shape-determining protein MreC | |||
| 7545 | R | HpySP301XIP (91% identity) | HpyMT5105ORF7550P | |
| ??? | M | M.Hpyfe124ORF6905P (95% identity) | M.HpyMT5105ORF7550P | |
| 7560 | DUF1887 family protein | |||