Helicobacter pylori MT5125 |
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Putative Helicobacter pylori MT5125 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,685,803 bp
GenBank #: CP071978
REBASE acronym: HpyMT5125
Org_num: 48219
All begin J5D24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2135 | RNA degradosome polyphosphate kinase | |||
| 2145 | S | S.HpyPE116ORF2130P (98% identity) | CTANNNNNNTC | S.HpyMT5125VII |
| 2150 | M | M.HpyBR19ORF2140P (98% identity) | CTANNNNNNTC | M.HpyMT5125VII |
| 2155 | R | HpyCOL208ORF2165P (93% identity) | CTANNNNNNTC | HpyMT5125VIIP |
| 2160 | motility associated factor glycosyltransferase | |||
| 3885 | outer membrane beta-barrel protein HofF | |||
| 3890 | S | S.HpyU106ORF2295P (63% identity) | S.HpyMT5125ORF3890P | |
| 3895 | cadmium-translocating P-type ATPase | |||
| 4170 | hydroxyethylthiazole kinase | |||
| 4175 | R | HpyMT5135ORF4055P (97% identity) | HpyMT5125ORF4185P | |
| 4180 | S | S.HpyME35ORF3920P (92% identity) | S.HpyMT5125ORF4185P | |
| 4185 | M | M.HpyGCT43ORF6455P (95% identity) | M.HpyMT5125ORF4185P | |
| 4190 | phosphatase PAP2 family protein | |||
| 6895 | M48 family metallopeptidase | |||
| 6900 | R | HpyMT5119ORF6630P (96% identity) | HpyMT5125ORF6905P | |
| 6905 | M | M.HpyPOR112ORF7595P (96% identity) | M.HpyMT5125ORF6905P | |
| 6910 | S | S.HpyDO2ORF3050P (94% identity) | S.HpyMT5125ORF6905P | |
| 6915 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpyMT5114ORF250P (100% identity) | CCTC | M1.HpyMT5125ORF250P |
| 255 | M | M2.HpyGM7VIP (95% identity) | M2.HpyMT5125ORF250P | |
| 260 | iron permease | |||
| 255 | DNA cytosine methyltransferase | |||
| ??? | R | HpyME43ORF275P (97% identity) | CCTTC | HpyMT5125VIP |
| 270 | M | M.HpyMT5119VI (99% identity) | CCTTC | M.HpyMT5125VI |
| 275 | sodium/proline symporter PutP | |||
| 450 | ACP S-malonyltransferase | |||
| ??? | R | HpyMT5114VIIP (100% identity) | GATC | HpyMT5125XIP |
| 465 | M | M.HpyMT5114VII (99% identity) | GATC | M.HpyMT5125XI |
| 470 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1275 | exodeoxyribonuclease VII large subunit | |||
| 1280 | M | M.HpyMT5119XI (98% identity) | TCGA | M.HpyMT5125XIII |
| 1285 | 80 aa hypothetical protein | |||
| 1285 | 80 aa hypothetical protein | |||
| 1290 | R | HpyMT5114ORF1275P (99% identity) | CCGG | HpyMT5125ORF1295P |
| 1295 | M | M.HpyMT5114ORF1275P (99% identity) | CCGG | M.HpyMT5125ORF1295P |
| 1300 | AAA family ATPase | |||
| 2225 | Hop family outer membrane protein HopJ/HopK | |||
| 2230 | M | M.HpyC017IV (97% identity) | ATTAAT | M.HpyMT5125III |
| 2235 | glycosyltransferase family 9 protein | |||
| 2240 | translational GTPase TypA | |||
| 2245 | M | M.HpySP609II (98% identity) | ACNGT | M.HpyMT5125II |
| 2250 | R | HpyU412ORF2250P (90% identity) | ACNGT | HpyMT5125IIP |
| 2255 | DNA cytosine methyltransferase | |||
| 2250 | GIY-YIG nuclease family protein | |||
| 2255 | M | M.HpyCA12ORF4760P (98% identity) | ACGT | M.HpyMT5125ORF2255P |
| 2260 | R | HpyU434ORF2280P (96% identity) | ACGT | HpyMT5125ORF2255P |
| 2265 | catalase | |||
| 2350 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyMT5105IX (99% identity) | GTAC | M.HpyMT5125XII |
| 2360 | R | Hpy5056ORF8380P (99% identity) | GTAC | HpyMT5125XIIP |
| 2365 | peptidoglycan DD-metalloendopeptidase family | |||
| 3295 | (Fe-S)-binding protein | |||
| 3300 | RM | Hpy340ORF4260P (91% identity) | HpyMT5125ORF3300P | |
| 3305 | SIR2 family protein | |||
| 3400 | 3-5 exonuclease | |||
| 3405 | M | M.HpyU306III (99% identity) | CCNNGG | M.HpyMT5125V |
| 3410 | R | HpySP807IIIP (99% identity) | CCNNGG | HpyMT5125VP |
| 3415 | acetone carboxylase subunit gamma | |||
| 4465 | flagellar hook protein FlgE | |||
| 4470 | R | HpyCOL201ORF860P (100% identity) | GTNNAC | HpyMT5125ORF4475P |
| ??? | M | M.Hpy207ORF5555P (97% identity) | GTNNAC | M.HpyMT5125ORF4475P |
| 4480 | ATP-dependent helicase | |||
| 5335 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5340 | M | M.HpyH004II (99% identity) | TCNNGA | M.HpyMT5125XV |
| 5345 | R | Hpy5056ORF5250P (98% identity) | TCNNGA | HpyMT5125XVP |
| 5350 | Laminin subunit alpha-2 precursor | |||
| 5535 | 144 aa hypothetical protein | |||
| 5540 | R | HpyMT5114ORF5640P (100% identity) | GCGC | HpyMT5125ORF5545P |
| ??? | M | M.HpyMT5114ORF5640P (99% identity) | GCGC | M.HpyMT5125ORF5545P |
| 5550 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5820 | Hop family adhesin HopQ | |||
| 5825 | M | M.HpyU412X (100% identity) | TCNGA | M.HpyMT5125XIV |
| 5830 | R | HpyU408XP (100% identity) | TCNGA | HpyMT5125XIVP |
| 5835 | purine-nucleoside phosphorylase | |||
| 6015 | HAD family hydrolase | |||
| 6020 | M | M.HpyU311I (97% identity) | CATG | M.HpyMT5125I |
| 6025 | IceA2 protein | |||
| 6740 | S41 family peptidase | |||
| 6745 | R | HpyMT5111VIP (98% identity) | GANTC | HpyMT5125XP |
| 6750 | M | M.HpyZ011V (99% identity) | GANTC | M.HpyMT5125X |
| 6755 | N-6 DNA methylase | |||
| 6750 | site-specific DNA-methyltransferase | |||
| 6755 | RM | HpyU437ORF6465P (88% identity) | HpyMT5125ORF6755P | |
| 6760 | carboxylating nicotinate-nucleotide | |||
| 6810 | copper response regulator transcription factor | |||
| 6815 | R | HpyMT5114ORF6900P (100% identity) | HpyMT5125ORF6815P | |
| 6820 | 67 aa hypothetical protein | |||
| 6975 | type III restriction-modification system | |||
| 6980 | RM | HpyCOL202ORF7100P (96% identity) | HpyMT5125ORF6980P | |
| 6985 | 176 aa hypothetical protein | |||
| 7060 | outer membrane protein | |||
| 7065 | R | HpyMT5114IIIP (99% identity) | CCATC | HpyMT5125IVP |
| 7070 | M | M1.HpyMT5114III (99% identity) | CCATC | M1.HpyMT5125IV |
| ??? | M | M2.HpyCOL209XVI (77% identity) | CCATC | M2.HpyMT5125IV |
| 7080 | LptF/LptG family permease | |||
| 7205 | ComF family protein | |||
| 7210 | RM | HpySP05ORF800P (98% identity) | HpyMT5125ORF7210P | |
| 7215 | S | S1.HpySG38ORF7170P (95% identity) | S1.HpyMT5125ORF7210P | |
| 7220 | S | S2.HpyNCI49ORFVP (83% identity) | S2.HpyMT5125ORF7210P | |
| 7225 | DNA polymerase I | |||
| 7485 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyMT5114VP (100% identity) | GAATTC | HpyMT5125IXP |
| 7495 | M | M.HpyU420VI (100% identity) | GAATTC | M.HpyMT5125IX |
| 7500 | glycosyltransferase family 8 protein | |||
| 7650 | site-specific DNA-methyltransferase | |||
| 7655 | M | M2.HpyU305VII (99% identity) | GAAGA | M1.HpyMT5125VIII |
| 7660 | M | M1.HpyU423VI (98% identity) | GAAGA | M2.HpyMT5125VIII |
| 7665 | R | HpyDO6VP (98% identity) | GAAGA | HpyMT5125VIIIP |
| 7670 | copper response regulator transcription factor | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6965 | ATP-dependent DNA helicase RecG | |||
| 6970 | M | M.Hpyfe32ORF40P (94% identity) | M.HpyMT5125ORF6970P | |
| 6975 | R | Hpy9310ORFOP (95% identity) | HpyMT5125ORF6970P | |
| 6980 | class I SAM-dependent DNA methyltransferase | |||
| 7575 | biotin synthase | |||
| 7580 | R | HpyCA12ORF7705P (90% identity) | HpyMT5125ORF7585P | |
| 7585 | M | M.HpyNG06ORF6725P (95% identity) | M.HpyMT5125ORF7585P | |
| 7590 | DNA/RNA non-specific endonuclease | |||
| 7640 | rod shape-determining protein MreC | |||
| 7645 | R | HpyME06ORF6670P (93% identity) | HpyMT5125ORF7650P | |
| 7650 | M | M.HpyNG19ORF7550P (94% identity) | M.HpyMT5125ORF7650P | |
| 7655 | site-specific DNA-methyltransferase | |||