Helicobacter pylori MT5111 |
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Putative Helicobacter pylori MT5111 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,668,381 bp
GenBank #: CP071981
REBASE acronym: HpyMT5111
Org_num: 48214
All begin J5D27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2115 | RNA degradosome polyphosphate kinase | |||
| 2125 | S | S.HpySP610ORF2515P (98% identity) | S.HpyMT5111ORF2130P | |
| 2130 | M | M.HpyMT5114ORF2130P (100% identity) | M.HpyMT5111ORF2130P | |
| 2135 | R | HpyMT5114ORF2130P (99% identity) | HpyMT5111ORF2130P | |
| 2140 | motility associated factor glycosyltransferase | |||
| 3755 | outer membrane beta-barrel protein HofF | |||
| 3760 | S | S.HpyME02XII (95% identity) | S.HpyMT5111ORF3760P | |
| 3765 | cadmium-translocating P-type ATPase | |||
| 4040 | hydroxyethylthiazole kinase | |||
| 4045 | R | HpyCOL208ORF4105P (99% identity) | HpyMT5111ORF4055P | |
| 4050 | S | S.HpySP404ORF4110P (95% identity) | S.HpyMT5111ORF4055P | |
| 4055 | M | M.HpyMT5114ORF4065P (93% identity) | M.HpyMT5111ORF4055P | |
| 4060 | phosphatase PAP2 family protein | |||
| 6825 | M48 family metallopeptidase | |||
| 6830 | R | HpyMT5114XIIIP (100% identity) | CTTTANNNNNNNTTC | HpyMT5111XIIIP |
| 6835 | M | M.HpyMT5114XIII (100% identity) | CTTTANNNNNNNTTC | M.HpyMT5111XIII |
| 6840 | S | S.HpyMT5114XIII (100% identity) | CTTTANNNNNNNTTC | S.HpyMT5111XIII |
| 6845 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpyMT5125ORF250P (100% identity) | CCTC | M1.HpyMT5111ORF250P |
| 255 | M | M2.HpyMT5114ORF250P (100% identity) | CCTC | M2.HpyMT5111ORF250P |
| 260 | restriction endonuclease | |||
| 255 | DNA cytosine methyltransferase | |||
| ??? | R | HpyMT5114IVP (100% identity) | CCTTC | HpyMT5111IVP |
| 265 | M | M.HpyMT5114IV (100% identity) | CCTTC | M.HpyMT5111IV |
| 270 | sodium/proline symporter PutP | |||
| 455 | ACP S-malonyltransferase | |||
| ??? | R | HpyMT5125XIP (100% identity) | GATC | HpyMT5111VIIP |
| 470 | M | M.HpyMT5114VII (100% identity) | GATC | M.HpyMT5111VII |
| 475 | alpha-1,2-fucosyltransferase | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyMT5105X (99% identity) | TCGA | M.HpyMT5111X |
| 1265 | 198 aa hypothetical protein | |||
| 1260 | site-specific DNA-methyltransferase | |||
| ??? | R | HpyU406IIIP (100% identity) | CCGG | HpyMT5111ORF1270P |
| 1270 | M | M.HpyU434IV (100% identity) | CCGG | M.HpyMT5111ORF1270P |
| 1275 | AAA family ATPase | |||
| 2205 | Hop family outer membrane protein HopJ/HopK | |||
| ??? | M | M.HpyMT5114II (100% identity) | ATTAAT | M.HpyMT5111II |
| 2215 | glycosyltransferase family 9 protein | |||
| 2220 | translational GTPase TypA | |||
| 2225 | M | M.HpyMT5114ORF2225P (100% identity) | ACNGT | M.HpyMT5111ORF2225P |
| 2230 | R | HpyMT5114ORF2225P (100% identity) | ACNGT | HpyMT5111ORF2225P |
| 2235 | DNA cytosine methyltransferase | |||
| 2230 | GIY-YIG nuclease family protein | |||
| 2235 | M | M.HpyMT5114ORF2235P (100% identity) | ACGT | M.HpyMT5111ORF2235P |
| 2240 | R | HpyMT5114ORF2235P (100% identity) | ACGT | HpyMT5111ORF2235P |
| 2245 | catalase | |||
| 2330 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyMT5135VII (99% identity) | GTAC | M.HpyMT5111VIII |
| ??? | R | HpyMT5135VIIP (100% identity) | GTAC | HpyMT5111VIIIP |
| 2350 | peptidoglycan DD-metalloendopeptidase family | |||
| 3155 | (Fe-S)-binding protein | |||
| 3160 | RM | HpyME04ORF3300P (91% identity) | HpyMT5111ORF3160P | |
| 3165 | SIR2 family protein | |||
| 3260 | 3-5 exonuclease | |||
| 3265 | M | M.HpyMT5114ORF3270P (100% identity) | CCNNGG | M.HpyMT5111ORF3265P |
| 3270 | R | HpyMT5114ORF3270P (100% identity) | CCNNGG | HpyMT5111ORF3265P |
| 3275 | acetone carboxylase subunit gamma | |||
| 4340 | flagellar hook protein FlgE | |||
| 4345 | R | HpyMT5114IXP (100% identity) | GTNNAC | HpyMT5111IXP |
| ??? | M | M.HpyMT5114IX (100% identity) | GTNNAC | M.HpyMT5111IX |
| 4355 | ATP-dependent helicase | |||
| 5280 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5285 | M | M.HpyMT5114XII (100% identity) | TCNNGA | M.HpyMT5111XII |
| 5290 | R | HpyMT5114XIIP (100% identity) | TCNNGA | HpyMT5111XIIP |
| 5295 | Laminin subunit alpha-2 precursor | |||
| 5485 | 144 aa hypothetical protein | |||
| 5490 | R | HpyMT5125ORF5545P (100% identity) | GCGC | HpyMT5111ORF5495P |
| 5495 | M | M.HpyMT5114ORF5640P (100% identity) | GCGC | M.HpyMT5111ORF5495P |
| 5500 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5770 | Hop family adhesin HopQ | |||
| 5775 | M | M.HpyU412X (100% identity) | TCNGA | M.HpyMT5111XI |
| 5780 | R | HpyU408XP (100% identity) | TCNGA | HpyMT5111XIP |
| 5785 | purine-nucleoside phosphorylase | |||
| 5955 | HAD family hydrolase | |||
| 5960 | M | M.HpyMT5114I (100% identity) | CATG | M.HpyMT5111I |
| 5965 | IceA2 protein | |||
| 6665 | PDZ domain-containing protein | |||
| 6670 | R | HpyMT5114VIP (98% identity) | GANTC | HpyMT5111VIP |
| 6675 | M | M.HpyU419VI (100% identity) | GANTC | M.HpyMT5111VI |
| 6680 | DNA methyltransferase | |||
| 6675 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyMT5114ORF6835P (100% identity) | HpyMT5111ORF6680P | |
| 6690 | carboxylating nicotinate-nucleotide | |||
| 6740 | copper response regulator transcription factor | |||
| 6745 | R | HpyMT5125ORF6815P (100% identity) | HpyMT5111ORF6745P | |
| 6750 | 67 aa hypothetical protein | |||
| 6910 | type III restriction-modification system | |||
| 6915 | RM | HpyMT5114ORF7065P (99% identity) | HpyMT5111ORF6915P | |
| 6920 | 176 aa hypothetical protein | |||
| 6995 | outer membrane protein | |||
| 7000 | R | HpyMT5114IIIP (100% identity) | CCATC | HpyMT5111IIIP |
| 7005 | M | M1.HpyMT5114III (100% identity) | CCATC | M1.HpyMT5111III |
| ??? | M | M2.HpyMT5114III (100% identity) | CCATC | M2.HpyMT5111III |
| 7015 | LptF/LptG family permease | |||
| 7140 | ComF family protein | |||
| 7145 | RM | HpyCOL208ORF7145P (100% identity) | HpyMT5111ORF7145P | |
| 7150 | S | S.HpyCOL208ORF7145P (100% identity) | S.HpyMT5111ORF7145P | |
| 7155 | DNA polymerase I | |||
| 7430 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyMT5125IXP (100% identity) | GAATTC | HpyMT5111VP |
| 7440 | M | M.HpyU420VI (100% identity) | GAATTC | M.HpyMT5111V |
| 7445 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6895 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyMT5114ORF7055P (100% identity) | M.HpyMT5111ORF6900P | |
| 6910 | R | HpyMT5114ORF7055P (100% identity) | HpyMT5111ORF6900P | |
| 6915 | class I SAM-dependent DNA methyltransferase | |||
| 7505 | biotin synthase | |||
| 7510 | R | HpyMT5114ORF7660P (94% identity) | HpyMT5111ORF7515P | |
| 7515 | M | M.HpyU417ORF7235P (95% identity) | M.HpyMT5111ORF7515P | |
| 7520 | DNA/RNA non-specific endonuclease | |||
| 7570 | rod shape-determining protein MreC | |||
| 7575 | R | HpyMT5114ORF7725P (99% identity) | HpyMT5111ORF7580P | |
| 7580 | M | M.HpyGM7ORF7605P (83% identity) | M.HpyMT5111ORF7580P | |
| 7585 | copper response regulator transcription factor | |||