Helicobacter pylori MT5114 |
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Putative Helicobacter pylori MT5114 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,690,568 bp
GenBank #: CP071984
REBASE acronym: HpyMT5114
Org_num: 48215
All begin J5D20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2115 | RNA degradosome polyphosphate kinase | |||
| 2125 | S | S.HpyF015ORF2185P (98% identity) | S.HpyMT5114ORF2130P | |
| 2130 | M | M.HpyMT5111ORF2130P (100% identity) | M.HpyMT5114ORF2130P | |
| 2135 | R | HpyMT5111ORF2130P (99% identity) | HpyMT5114ORF2130P | |
| 2140 | motility associated factor glycosyltransferase | |||
| 3750 | outer membrane beta-barrel protein HofF | |||
| 3755 | S | S.HpyPE18XIX (94% identity) | S.HpyMT5114ORF3755P | |
| 3760 | cadmium-translocating P-type ATPase | |||
| 4035 | hydroxyethylthiazole kinase | |||
| ??? | R | HpyCOL208ORF4105P (99% identity) | HpyMT5114ORF4065P | |
| 4060 | S | S.HpyMT5111ORF3760P (98% identity) | S.HpyMT5114ORF4065P | |
| 4065 | M | M.HpyMT5111ORF4055P (93% identity) | M.HpyMT5114ORF4065P | |
| 4070 | phosphatase PAP2 family protein | |||
| 6980 | M48 family metallopeptidase | |||
| 6985 | R | HpyMT5111XIIIP (100% identity) | CTTTANNNNNNNTTC | HpyMT5114XIIIP |
| 6990 | M | M.HpyMT5111XIII (100% identity) | CTTTANNNNNNNTTC | M.HpyMT5114XIII |
| 6995 | S | S.HpyMT5111XIII (100% identity) | CTTTANNNNNNNTTC | S.HpyMT5114XIII |
| 7000 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpyMT5125ORF250P (100% identity) | CCTC | M1.HpyMT5114ORF250P |
| 255 | M | M2.HpyMT5111ORF250P (100% identity) | CCTC | M2.HpyMT5114ORF250P |
| 260 | restriction endonuclease | |||
| 255 | DNA cytosine methyltransferase | |||
| ??? | R | HpyMT5111IVP (100% identity) | CCTTC | HpyMT5114IVP |
| 265 | M | M.HpyMT5111IV (100% identity) | CCTTC | M.HpyMT5114IV |
| 270 | sodium/proline symporter PutP | |||
| 450 | ACP S-malonyltransferase | |||
| ??? | R | HpyMT5125XIP (100% identity) | GATC | HpyMT5114VIIP |
| 465 | M | M.HpyMT5111VII (100% identity) | GATC | M.HpyMT5114VII |
| 470 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| 1260 | M | M.HpyMT5125XIII (98% identity) | TCGA | M.HpyMT5114X |
| 1265 | 80 aa hypothetical protein | |||
| 1265 | 80 aa hypothetical protein | |||
| 1270 | R | HpyMT5125ORF1295P (99% identity) | CCGG | HpyMT5114ORF1275P |
| 1275 | M | M.HpyMT5125ORF1295P (99% identity) | CCGG | M.HpyMT5114ORF1275P |
| 1280 | AAA family ATPase | |||
| 2205 | Hop family outer membrane protein HopJ/HopK | |||
| ??? | M | M.HpyMT5111II (100% identity) | ATTAAT | M.HpyMT5114II |
| 2215 | glycosyltransferase family 9 protein | |||
| 2220 | translational GTPase TypA | |||
| 2225 | M | M.HpyMT5111ORF2225P (100% identity) | ACNGT | M.HpyMT5114ORF2225P |
| 2230 | R | HpyMT5111ORF2225P (100% identity) | ACNGT | HpyMT5114ORF2225P |
| 2235 | DNA cytosine methyltransferase | |||
| 2230 | GIY-YIG nuclease family protein | |||
| 2235 | M | M.HpyMT5111ORF2235P (100% identity) | ACGT | M.HpyMT5114ORF2235P |
| 2240 | R | HpyMT5111ORF2235P (100% identity) | ACGT | HpyMT5114ORF2235P |
| 2245 | catalase | |||
| 2330 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyKE21ORF6680P (98% identity) | GTAC | M.HpyMT5114VIII |
| 2340 | R | Hpy45kORF4110P (98% identity) | GTAC | HpyMT5114VIIIP |
| 2345 | peptidoglycan DD-metalloendopeptidase family | |||
| 3160 | (Fe-S)-binding protein | |||
| 3165 | RM | HpyU306ORF3125P (94% identity) | HpyMT5114ORF3165P | |
| 3170 | SIR2 family protein | |||
| 3265 | 3-5 exonuclease | |||
| 3270 | M | M.HpyMT5111ORF3265P (100% identity) | CCNNGG | M.HpyMT5114ORF3270P |
| 3275 | R | HpyMT5111ORF3265P (100% identity) | CCNNGG | HpyMT5114ORF3270P |
| 3280 | acetone carboxylase subunit gamma | |||
| 4350 | flagellar hook protein FlgE | |||
| 4355 | R | HpyMT5111IXP (100% identity) | GTNNAC | HpyMT5114IXP |
| ??? | M | M.HpyMT5111IX (100% identity) | GTNNAC | M.HpyMT5114IX |
| 4365 | ATP-dependent helicase | |||
| 5425 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5430 | M | M.HpyMT5111XII (100% identity) | TCNNGA | M.HpyMT5114XII |
| 5435 | R | HpyMT5111XIIP (100% identity) | TCNNGA | HpyMT5114XIIP |
| 5440 | Laminin subunit alpha-2 precursor | |||
| 5630 | 144 aa hypothetical protein | |||
| 5635 | R | HpyMT5125ORF5545P (100% identity) | GCGC | HpyMT5114ORF5640P |
| 5640 | M | M.HpyMT5111ORF5495P (100% identity) | GCGC | M.HpyMT5114ORF5640P |
| 5645 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5920 | Hop family adhesin HopQ | |||
| 5925 | M | M.HpyU412X (100% identity) | TCNGA | M.HpyMT5114XI |
| 5930 | R | HpyU408XP (100% identity) | TCNGA | HpyMT5114XIP |
| 5935 | purine-nucleoside phosphorylase | |||
| 6110 | HAD family hydrolase | |||
| 6115 | M | M.HpyMT5111I (100% identity) | CATG | M.HpyMT5114I |
| 6120 | IceA2 protein | |||
| 6820 | PDZ domain-containing protein | |||
| 6825 | R | HpyMT5111VIP (98% identity) | GANTC | HpyMT5114VIP |
| 6830 | M | M.HpyU419VI (100% identity) | GANTC | M.HpyMT5114VI |
| 6835 | DNA methyltransferase | |||
| 6830 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyMT5111ORF6680P (100% identity) | HpyMT5114ORF6835P | |
| 6845 | carboxylating nicotinate-nucleotide | |||
| 6895 | copper response regulator transcription factor | |||
| 6900 | R | HpyMT5125ORF6815P (100% identity) | HpyMT5114ORF6900P | |
| 6905 | 67 aa hypothetical protein | |||
| 7060 | type III restriction-modification system | |||
| 7065 | RM | HpyMT5111ORF6915P (99% identity) | HpyMT5114ORF7065P | |
| 7070 | 176 aa hypothetical protein | |||
| 7145 | outer membrane protein | |||
| 7150 | R | HpyMT5111IIIP (100% identity) | CCATC | HpyMT5114IIIP |
| 7155 | M | M1.HpyMT5111III (100% identity) | CCATC | M1.HpyMT5114III |
| ??? | M | M2.HpyMT5111III (100% identity) | CCATC | M2.HpyMT5114III |
| 7165 | LptF/LptG family permease | |||
| 7290 | ComF family protein | |||
| 7295 | RM | HpyMT5111ORF7145P (99% identity) | HpyMT5114ORF7295P | |
| 7300 | S | S.Hpy12SORF1498P (93% identity) | S.HpyMT5114ORF7295P | |
| 7305 | DNA polymerase I | |||
| 7575 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyMT5125IXP (100% identity) | GAATTC | HpyMT5114VP |
| 7585 | M | M.HpyU420VI (100% identity) | GAATTC | M.HpyMT5114V |
| 7590 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7050 | ATP-dependent DNA helicase RecG | |||
| 7055 | M | M.HpyMT5111ORF6900P (100% identity) | M.HpyMT5114ORF7055P | |
| 7060 | R | HpyMT5111ORF6900P (100% identity) | HpyMT5114ORF7055P | |
| 7065 | class I SAM-dependent DNA methyltransferase | |||
| 7650 | biotin synthase | |||
| 7655 | R | HpyCOL208ORF7510P (89% identity) | HpyMT5114ORF7660P | |
| 7660 | M | M.Hpy5024ORF9310P (97% identity) | M.HpyMT5114ORF7660P | |
| 7665 | DNA/RNA non-specific endonuclease | |||
| 7715 | rod shape-determining protein MreC | |||
| 7720 | R | HpyMT5111ORF7580P (99% identity) | HpyMT5114ORF7725P | |
| 7725 | M | M.HpyPE18ORF7585P (82% identity) | M.HpyMT5114ORF7725P | |
| 7730 | copper response regulator transcription factor | |||