Helicobacter pylori MT5119 |
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Putative Helicobacter pylori MT5119 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,622,324 bp
GenBank #: CP071985
REBASE acronym: HpyMT5119
Org_num: 48217
All begin J5D26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2155 | RNA degradosome polyphosphate kinase | |||
| 2165 | S | S.HpySP111III (98% identity) | CACNNNNNTTA | S.HpyMT5119ORF2170P |
| 2170 | M | M.HpyU418ORF2165P (96% identity) | CACNNNNNTTA | M.HpyMT5119ORF2170P |
| 2175 | R | HpySG06ORF2215P (89% identity) | CACNNNNNTTA | HpyMT5119ORF2170P |
| 2180 | motility associated factor glycosyltransferase | |||
| 3760 | 318 aa hypothetical protein | |||
| 3765 | S | S.HpyP001III (97% identity) | S.HpyMT5119ORF3765P | |
| 3770 | cadmium-translocating P-type ATPase | |||
| 4045 | hydroxyethylthiazole kinase | |||
| 4050 | R | HpyU415ORF4030P (95% identity) | CTANNNNNNNNTTG | HpyMT5119ORF4060P |
| 4055 | S | S.HpySP05XIV (96% identity) | CTANNNNNNNNTTG | S.HpyMT5119ORF4060P |
| 4060 | M | M.HpyGM9X (98% identity) | CTANNNNNNNNTTG | M.HpyMT5119ORF4060P |
| 4065 | DNA cytosine methyltransferase | |||
| 6620 | M48 family metallopeptidase | |||
| 6625 | R | HpyMT5125ORF6905P (96% identity) | HpyMT5119ORF6630P | |
| 6630 | M | M.HpyCOL209ORF7270P (98% identity) | M.HpyMT5119ORF6630P | |
| 6635 | S | S.HpyGH9XVII (95% identity) | S.HpyMT5119ORF6630P | |
| 6640 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine/peptidylarginine deiminase | |||
| 255 | M | M1.HpyL035V (98% identity) | CCTC | M1.HpyMT5119ORF255P |
| 260 | M | M2.HpyU413ORF250P (96% identity) | CCTC | M2.HpyMT5119ORF255P |
| 265 | restriction endonuclease | |||
| 260 | DNA cytosine methyltransferase | |||
| 265 | R | HpyC021XIIIP (98% identity) | CCTTC | HpyMT5119VIP |
| 270 | M | M.HpyMT5125VI (99% identity) | CCTTC | M.HpyMT5119VI |
| 275 | sodium/proline symporter PutP | |||
| 465 | 322 aa hypothetical protein | |||
| 470 | M | M.HpyCOL113VIII (98% identity) | GATC | M.HpyMT5119VIII |
| 475 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1275 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyBR2XI (98% identity) | TCGA | M.HpyMT5119XI |
| 1285 | 69 aa hypothetical protein | |||
| 1285 | 69 aa hypothetical protein | |||
| ??? | R | HpyGCT17ORFSP (97% identity) | CCGG | HpyMT5119VP |
| 1300 | M | M.HpyBR13IX (99% identity) | CCGG | M.HpyMT5119V |
| 1305 | AAA family ATPase | |||
| 1535 | polysaccharide deacetylase | |||
| 1540 | R | HpySP205VP (98% identity) | CTNAG | HpyMT5119VIIP |
| 1545 | M | M.HpyH017V (99% identity) | CTNAG | M.HpyMT5119VII |
| 1550 | 122 aa hypothetical protein | |||
| 2240 | Hop family outer membrane protein HopJ/HopK | |||
| 2245 | M | M.HpyU432III (97% identity) | ATTAAT | M.HpyMT5119III |
| 2250 | glycosyltransferase family 9 protein | |||
| 2255 | translational GTPase TypA | |||
| 2260 | M | M.HpyH023II (99% identity) | ACNGT | M.HpyMT5119II |
| 2265 | R | HpyCOL204ORF2265P (98% identity) | ACNGT | HpyMT5119IIP |
| 2270 | DNA cytosine methyltransferase | |||
| 2265 | GIY-YIG nuclease family protein | |||
| 2270 | M | M.HpyFD423ORFOP (97% identity) | ACGT | M.HpyMT5119ORF2270P |
| 2275 | R | HpyCOL208ORF2270P (98% identity) | ACGT | HpyMT5119ORF2270P |
| 2280 | catalase | |||
| 2370 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyMT5135VII (97% identity) | GTAC | M.HpyMT5119IX |
| 2380 | R | HpyU434VIIIP (99% identity) | GTAC | HpyMT5119IXP |
| 2385 | peptidoglycan DD-metalloendopeptidase family | |||
| 3170 | (Fe-S)-binding protein | |||
| ??? | RM | HpyPO04ORF3260P (90% identity) | HpyMT5119ORF3175P | |
| 3185 | SIR2 family protein | |||
| 3265 | 3-5 exonuclease | |||
| 3270 | M | M.HpyU420IV (98% identity) | CCNNGG | M.HpyMT5119ORF3270P |
| 3275 | R | HpyCOL118ORF3575P (98% identity) | CCNNGG | HpyMT5119ORF3270P |
| 3280 | acetone carboxylase subunit gamma | |||
| 4060 | type I restriction-modification system subunit | |||
| 4065 | M | M.HpyU433ORF4085P (99% identity) | M.HpyMT5119ORF4065P | |
| 4070 | R | HpyCOL206ORF4030P (100% identity) | HpyMT5119ORF4065P | |
| 4075 | phosphatase PAP2 family protein | |||
| 4365 | flagellar hook protein FlgE | |||
| 4370 | R | HpyPR02XP (97% identity) | GTNNAC | HpyMT5119XP |
| ??? | M | M.Hpy1171ORF140P (98% identity) | GTNNAC | M.HpyMT5119X |
| 4380 | ATP-dependent helicase | |||
| 5080 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5085 | M | M.HpyU005VI (99% identity) | TCNNGA | M.HpyMT5119XII |
| 5090 | R | HpyDO6XP (96% identity) | TCNNGA | HpyMT5119XIIP |
| 5095 | Laminin subunit alpha-2 precursor | |||
| 5285 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyMT5136ORF5445P (95% identity) | M.HpyMT5119ORF5290P | |
| 5295 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5735 | HAD family hydrolase | |||
| 5740 | M | M.HpyU417I (99% identity) | CATG | M.HpyMT5119I |
| 5745 | IceA2 protein | |||
| 6460 | type II restriction endonuclease | |||
| 6465 | R | HpyU434ORF6625AP (100% identity) | HpyMT5119ORF6475P | |
| 6470 | 57 aa hypothetical protein | |||
| 6475 | M | M.HpyZ004ORF6715P (40% identity) | M.HpyMT5119ORF6475P | |
| 6480 | DNA methyltransferase | |||
| 6480 | DNA methyltransferase | |||
| ??? | RM | HpyCOL208ORF6675P (86% identity) | HpyMT5119ORF6485P | |
| 6490 | carboxylating nicotinate-nucleotide | |||
| 6540 | copper response regulator transcription factor | |||
| 6545 | R | HpyPR05ORF6620P (98% identity) | HpyMT5119ORF6545P | |
| 6550 | 67 aa hypothetical protein | |||
| 6715 | 95 aa hypothetical protein | |||
| 6720 | RM | HpyB14ORF7305P (89% identity) | HpyMT5119ORF6720P | |
| 6725 | RNA-directed DNA polymerase | |||
| 6810 | outer membrane protein | |||
| 6815 | R | HpyF021IIIP (97% identity) | CCATC | HpyMT5119IVP |
| 6820 | M | M2.HpyIN9III (96% identity) | CCATC | M1.HpyMT5119IV |
| ??? | M | M1.HpyF014V (77% identity) | CCATC | M2.HpyMT5119IV |
| 6830 | LptF/LptG family permease | |||
| 6955 | ComF family protein | |||
| 6960 | RM | HpyLIM5ORF6920P (95% identity) | HpyMT5119ORF6960P | |
| 6965 | S | S.Hpy3250ORF6010P (95% identity) | S.HpyMT5119ORF6960P | |
| 6970 | DNA polymerase I | |||
| 7240 | UDP-N-acetylmuramate dehydrogenase | |||
| 7245 | M | M.HpyU423ORF7240P (99% identity) | M.HpyMT5119ORF7245P | |
| 7250 | ThaI family type II restriction endonuclease | |||
| 7245 | DNA (cytosine-5-)-methyltransferase | |||
| 7250 | R | HpyNCI22ORFKP (100% identity) | HpyMT5119ORF7250P | |
| 7255 | glycosyltransferase family 8 protein | |||
| 7390 | site-specific DNA-methyltransferase | |||
| 7395 | M | M.HpyKE21ORF1440P (97% identity) | M.HpyMT5119ORF7395P | |
| 7400 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6690 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyC127ORF7075P (95% identity) | M.HpyMT5119ORF6695P | |
| 6705 | R | HpyU304ORF6770P (95% identity) | HpyMT5119ORF6695P | |
| 6710 | 722 aa hypothetical protein | |||
| 7315 | biotin synthase | |||
| 7320 | R | HpyPE112ORF7405P (91% identity) | HpyMT5119ORF7325P | |
| 7325 | M | M.HpyBR2ORF7440P (94% identity) | M.HpyMT5119ORF7325P | |
| 7330 | DNA/RNA non-specific endonuclease | |||
| 7380 | rod shape-determining protein MreC | |||
| 7385 | R | HpyCOL209ORF6525P (96% identity) | HpyMT5119ORF7390P | |
| 7390 | M | M.HpyBR19ORF7545P (97% identity) | M.HpyMT5119ORF7390P | |
| 7395 | site-specific DNA-methyltransferase | |||