Helicobacter pylori MT5124 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori MT5124 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,661,144 bp
GenBank #: CP071986
REBASE acronym: HpyMT5124
Org_num: 48218
All begin J5D25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2150 | RNA degradosome polyphosphate kinase | |||
| ??? | S | S.HpySP209ORF1765P (97% identity) | S.HpyMT5124ORF2165P | |
| 2165 | M | M.HpyCOL305ORF2095P (97% identity) | M.HpyMT5124ORF2165P | |
| 2170 | R | HpyMA07ORF2100P (94% identity) | HpyMT5124ORF2165P | |
| 2175 | motility associated factor glycosyltransferase | |||
| 3630 | DNA-binding protein | |||
| 3635 | M | M.HpyLIM2ORF2675P (88% identity) | CTANNNNNNNTTG | M.HpyMT5124ORF3635P |
| 3640 | S | S.HpyJO2VI (97% identity) | CTANNNNNNNTTG | S.HpyMT5124ORF3635P |
| 3645 | R | HpyU437XIIIP (95% identity) | CTANNNNNNNTTG | HpyMT5124ORF3635P |
| 3650 | hydroxyethylthiazole kinase | |||
| 3935 | CAAX protease | |||
| 3940 | S | S.HpySP505VI (96% identity) | CRAANNNNNNCTT | S.HpyMT5124ORF3940P |
| 3945 | outer membrane beta-barrel protein HofF | |||
| 6790 | M48 family metallopeptidase | |||
| 6795 | R | HpyZ011XIIP (95% identity) | HpyMT5124ORF6800P | |
| 6800 | M | M.HpyU432ORF6745P (96% identity) | M.HpyMT5124ORF6800P | |
| 6805 | S | S.HpySG06ORF7335P (97% identity) | S.HpyMT5124ORF6800P | |
| 6810 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine/peptidylarginine deiminase | |||
| 255 | M | M1.HpyU427V (97% identity) | CCTC | M1.HpyMT5124ORF255P |
| 260 | M | M2.HpyU432ORF250P (98% identity) | CCTC | M2.HpyMT5124ORF255P |
| 265 | site-specific DNA-methyltransferase | |||
| 260 | DNA cytosine methyltransferase | |||
| ??? | M | M.HpyU437X (99% identity) | GTSAC | M.HpyMT5124ORF265P |
| 270 | R | HpyBR19VIP (98% identity) | GTSAC | HpyMT5124ORF265P |
| 275 | DNA cytosine methyltransferase | |||
| 470 | 329 aa hypothetical protein | |||
| 475 | M | M.HpyU104V (98% identity) | GATC | M.HpyMT5124VII |
| 480 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 865 | elongation factor P | |||
| 870 | M | M1.HpyCA8ORF870P (99% identity) | M.HpyMT5124ORF870P | |
| 875 | 256 aa hypothetical protein | |||
| 880 | R | R1.HpyC61ORFGP (95% identity) | R1.HpyMT5124ORF870P | |
| 885 | R | R2.HpyPE105ORF845P (96% identity) | R2.HpyMT5124ORF870P | |
| 890 | pseudaminic acid synthase | |||
| 1285 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy1171ORF4970P (98% identity) | TCGA | M.HpyMT5124X |
| 1295 | endonuclease | |||
| 1290 | site-specific DNA-methyltransferase | |||
| 1295 | R | HpyU306IIP (99% identity) | CCGG | HpyMT5124XIIP |
| 1300 | M | M.HpyU428III (100% identity) | CCGG | M.HpyMT5124XII |
| 1305 | AAA family ATPase | |||
| 1535 | polysaccharide deacetylase | |||
| 1540 | R | HpyMT5135VP (100% identity) | CTNAG | HpyMT5124VP |
| 1545 | M | M.HpyU411VIII (100% identity) | CTNAG | M.HpyMT5124V |
| 1550 | 122 aa hypothetical protein | |||
| 1725 | elongation factor 4 | |||
| 1730 | M | M.HpyU306ORF3945P (100% identity) | M.HpyMT5124ORF1730P | |
| 1735 | 133 aa hypothetical protein | |||
| 2240 | Hop family outer membrane protein HopJ/HopK | |||
| 2245 | M | M.HpyMT5118ORF2235P (99% identity) | ATTAAT | M.HpyMT5124III |
| 2250 | glycosyltransferase family 9 protein | |||
| 2255 | translational GTPase TypA | |||
| 2260 | M | M.HpyMT5105XIV (100% identity) | ACNGT | M.HpyMT5124II |
| 2265 | R | HpyU409IIP (99% identity) | ACNGT | HpyMT5124IIP |
| 2270 | DNA cytosine methyltransferase | |||
| 2265 | GIY-YIG nuclease family protein | |||
| 2270 | M | M.HpyU104ORF2215P (98% identity) | ACGT | M.HpyMT5124ORF2270P |
| 2275 | R | HpyMT5135ORF2245P (99% identity) | ACGT | HpyMT5124ORF2270P |
| 2280 | catalase | |||
| 2455 | Laminin subunit alpha-2 precursor | |||
| 2460 | R | HpyU306ORF5425P (100% identity) | TCNNGA | HpyMT5124ORF2465P |
| 2465 | M | M.HpyPE117XIII (98% identity) | TCNNGA | M.HpyMT5124ORF2465P |
| 2470 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3220 | ATP-dependent helicase | |||
| ??? | M | M.HpyU433IX (97% identity) | GTNNAC | M.HpyMT5124IX |
| 3230 | R | HpyGE4ORF4360P (97% identity) | GTNNAC | HpyMT5124IXP |
| 3235 | flagellar hook protein FlgE | |||
| 4435 | acetone carboxylase subunit gamma | |||
| 4440 | R | HpyMT5105IIP (99% identity) | CCNNGG | HpyMT5124IVP |
| 4445 | M | M.HpyU306III (100% identity) | CCNNGG | M.HpyMT5124IV |
| 4450 | 3-5 exonuclease | |||
| 4520 | SIR2 family protein | |||
| 4525 | RM | HpyISR9ORF3725P (88% identity) | HpyMT5124ORF4525P | |
| 4530 | (Fe-S)-binding protein | |||
| 5340 | peptidoglycan DD-metalloendopeptidase family | |||
| ??? | R | HpyU104VIP (98% identity) | GTAC | HpyMT5124VIIIP |
| ??? | M | M.HpyU301ORF2345P (99% identity) | GTAC | M.HpyMT5124VIII |
| 5360 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5445 | 144 aa hypothetical protein | |||
| ??? | M | M.HpySP404XVI (97% identity) | GCGC | M.HpyMT5124ORF5450P |
| 5455 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5900 | HAD family hydrolase | |||
| 5905 | M | M.HpySH014I (97% identity) | CATG | M.HpyMT5124I |
| ??? | R | HpyPU009IP (97% identity) | CATG | HpyMT5124IP |
| 5915 | serine O-acetyltransferase | |||
| 6630 | S41 family peptidase | |||
| 6635 | R | HpyU202VIIIP (96% identity) | GANTC | HpyMT5124VIP |
| 6640 | M | M.Hpy94ORF6990P (99% identity) | GANTC | M.HpyMT5124VI |
| 6645 | N-6 DNA methylase | |||
| 6640 | site-specific DNA-methyltransferase | |||
| 6645 | RM | HpyU421ORF6555P (88% identity) | HpyMT5124ORF6645P | |
| 6650 | carboxylating nicotinate-nucleotide | |||
| 6700 | copper response regulator transcription factor | |||
| 6705 | R | HpyMT5105XIIIP (100% identity) | TGCA | HpyMT5124XIP |
| 6710 | M | M.HpyMT5105XIII (100% identity) | TGCA | M.HpyMT5124XI |
| 6715 | 67 aa hypothetical protein | |||
| 6875 | 716 aa hypothetical protein | |||
| 6880 | RM | HpyH002XV (94% identity) | HpyMT5124ORF6880P | |
| 6885 | CAAX protease | |||
| 6955 | outer membrane protein | |||
| 6960 | R | HpyCO11IIIP (84% identity) | HpyMT5124ORF6960P | |
| 6965 | restriction endonuclease | |||
| 7095 | ComF family protein | |||
| 7100 | RM | HpyPE108ORF7065P (95% identity) | HpyMT5124ORF7100P | |
| 7105 | S | S.HpyT004ORF7320P (94% identity) | S.HpyMT5124ORF7100P | |
| 7110 | DNA polymerase I | |||
| 7375 | UDP-N-acetylmuramate dehydrogenase | |||
| 7380 | M | M.HpyGRE044ORF7020P (98% identity) | M.HpyMT5124ORF7380P | |
| 7385 | ThaI family type II restriction endonuclease | |||
| 7380 | DNA (cytosine-5-)-methyltransferase | |||
| 7385 | R | HpyME44ORF6975P (99% identity) | HpyMT5124ORF7385P | |
| 7390 | glycosyltransferase family 8 protein | |||
| 7525 | site-specific DNA-methyltransferase | |||
| 7530 | M | M.HpyMT5105ORF7560P (100% identity) | M.HpyMT5124ORF7530P | |
| 7535 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6860 | ATP-dependent DNA helicase RecG | |||
| 6865 | M | M.HpyU201ORF7530P (96% identity) | M.HpyMT5124ORF6865P | |
| 6870 | R | HpyMT5136ORF6880P (94% identity) | HpyMT5124ORF6865P | |
| 6875 | 716 aa hypothetical protein | |||
| 7450 | biotin synthase | |||
| 7455 | R | HpyBR10XVIIIP (93% identity) | HpyMT5124ORF7460P | |
| 7460 | M | M.HpySP409ORF7470P (95% identity) | M.HpyMT5124ORF7460P | |
| 7465 | DNA/RNA non-specific endonuclease | |||
| 7515 | rod shape-determining protein MreC | |||
| 7520 | R | HpyBGR3ORF6715P (94% identity) | HpyMT5124ORF7525P | |
| 7525 | M | M.HpyP103ORF6765P (92% identity) | M.HpyMT5124ORF7525P | |
| 7530 | DUF1887 family protein | |||