Escherichia coli 027_SK3 |
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Putative Escherichia coli 027_SK3 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,631,526 bp | CP067311 |
| plasmid p027_SK3a: | 293,362 bp | CP067312 |
| plasmid p027_SK3d: | 44,683 bp | CP067315 |
REBASE acronym: EcoSK3
Org_num: 46496
All begin JJB21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11175 | 322 aa hypothetical protein | |||
| 11180 | R | EcoWS38ORF11185P (100% identity) | EcoSK3ORF11185P | |
| 11185 | M | M.EcoWS38ORF11185P (100% identity) | M.EcoSK3ORF11185P | |
| 11190 | S | S.EcoWS38ORF11185P (100% identity) | S.EcoSK3ORF11185P | |
| 11195 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 700 | phosphohydrolase | |||
| 705 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoSK3DcmP |
| 710 | V | V.EcoWS38DcmP (100% identity) | V.EcoSK3DcmP | |
| 715 | drug/metabolite exporter YedA | |||
| 1245 | conserved phage C-terminal domain-containing | |||
| 1250 | M | M.EcoZE21ORF10305P (99% identity) | M.EcoSK3ORF1250P | |
| 1255 | RusA family crossover junction | |||
| 1285 | TrmB family transcriptional regulator | |||
| 1290 | M | M.EcoZE21ORF10265P (100% identity) | M.EcoSK3ORF1290P | |
| 1295 | holin | |||
| 5145 | NinE family protein | |||
| 5150 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoSK3ORF5150P |
| 5155 | recombination protein NinB | |||
| 15875 | cell division protein DamX | |||
| 15880 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSK3DamP |
| 15885 | ribulose-phosphate 3-epimerase | |||
| 16500 | DUF2556 family protein | |||
| 16505 | M | M.EcoWS38ORF16505P (100% identity) | ATGCAT | M.EcoSK3ORF16505P |
| 16510 | DNA-binding transcriptional regulator Fis | |||
| plasmid p027_SK3a | ||||
| 22585 | IS6-like element IS26 family transposase | |||
| 22590 | R | EcoS22ORF25180P (96% identity) | CCWGG | EcoSK3ORF22595P |
| 22595 | M | M.EcoS22ORF25180P (100% identity) | CCWGG | M.EcoSK3ORF22595P |
| 22600 | IS1 family transposase | |||
| 22790 | DNA polymerase III subunit beta | |||
| 22795 | M | M.Sen3039ORF24445P (100% identity) | M.EcoSK3ORF22795P | |
| 22800 | 76 aa hypothetical protein | |||
| plasmid p027_SK3d | ||||
| 24880 | recombinase family protein | |||
| 24885 | R | EcoE33ORF24185P (100% identity) | CCWGG | EcoSK3ORF24890P |
| 24890 | M | M.EcoS22ORF24285P (100% identity) | CCWGG | M.EcoSK3ORF24890P |
| 24895 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4950 | isocitrate dehydrogenase | |||
| 4955 | R | EcosEC27McrCP (100% identity) | EcoSK3McrCP | |
| 4960 | R | EcoteDMcrBP (100% identity) | EcoSK3McrBP | |
| 4965 | tail fiber assembly protein | |||
| 11195 | endoribonuclease SymE | |||
| 11200 | R | EcoWS38GmrSDP (100% identity) | EcoSK3GmrSDP | |
| 11205 | DUF1127 domain-containing protein | |||