Escherichia coli ABW_S38 |
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Putative Escherichia coli ABW_S38 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,648,008 bp | CP067265 |
| plasmid pABW_S38a: | 303,836 bp | CP067266 |
| plasmid pABW_S38d: | 44,683 bp | CP067269 |
REBASE acronym: EcoWS38
Org_num: 46524
All begin JJB13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11175 | 322 aa hypothetical protein | |||
| 11180 | R | EcoSK3ORF11185P (100% identity) | EcoWS38ORF11185P | |
| 11185 | M | M.EcoSK3ORF11185P (100% identity) | M.EcoWS38ORF11185P | |
| 11190 | S | S.EcoSK3ORF11185P (100% identity) | S.EcoWS38ORF11185P | |
| 11195 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 700 | phosphohydrolase | |||
| 705 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoWS38DcmP |
| 710 | V | V.EcoSK3DcmP (100% identity) | V.EcoWS38DcmP | |
| 715 | drug/metabolite exporter YedA | |||
| 1245 | conserved phage C-terminal domain-containing | |||
| 1250 | M | M.EcoZE21ORF10305P (99% identity) | M.EcoWS38ORF1250P | |
| 1255 | RusA family crossover junction | |||
| 1285 | TrmB family transcriptional regulator | |||
| 1290 | M | M.EcoZE21ORF10265P (100% identity) | M.EcoWS38ORF1290P | |
| 1295 | holin | |||
| 5145 | NinE family protein | |||
| 5150 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoWS38ORF5150P |
| 5155 | recombination protein NinB | |||
| 15875 | cell division protein DamX | |||
| 15880 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoWS38DamP |
| 15885 | ribulose-phosphate 3-epimerase | |||
| 16500 | DUF2556 family protein | |||
| 16505 | M | M.EcoSK3ORF16505P (100% identity) | ATGCAT | M.EcoWS38ORF16505P |
| 16510 | tyrosine-type recombinase/integrase | |||
| plasmid pABW_S38a | ||||
| 23640 | 76 aa hypothetical protein | |||
| 23645 | M | M.Sen3039ORF24445P (100% identity) | M.EcoWS38ORF23645P | |
| 23650 | DNA polymerase III subunit beta | |||
| 23840 | IS1 family transposase | |||
| 23845 | M | M.SflLIN11ORF24665P (99% identity) | CCWGG | M.EcoWS38ORF23845P |
| 23850 | R | Ubap201ORF4P (79% identity) | CCWGG | EcoWS38ORF23845P |
| 23855 | IS6-like element IS26 family transposase | |||
| plasmid pABW_S38d | ||||
| 24795 | recombinase family protein | |||
| 24800 | R | Ssp3CORF24390P (100% identity) | CCWGG | EcoWS38ORF24805P |
| 24805 | M | M.Sso12984ORF5284P (100% identity) | CCWGG | M.EcoWS38ORF24805P |
| 24810 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4950 | isocitrate dehydrogenase | |||
| 4955 | R | EcosEC27McrCP (100% identity) | EcoWS38McrCP | |
| 4960 | R | EcoteDMcrBP (100% identity) | EcoWS38McrBP | |
| 4965 | tail fiber assembly protein | |||
| 11195 | endoribonuclease SymE | |||
| 11200 | R | EcoSK3GmrSDP (100% identity) | EcoWS38GmrSDP | |
| 11205 | DUF1127 domain-containing protein | |||