Vibrio species B1ASS3 |
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Putative Vibrio species B1ASS3 RM systems
Ref: Gautier,M. and Culot,A. unpublished
REBASE ref # 32506
Complete sequence: 4,055,171 bp
GenBank #: HG992742
REBASE acronym: VspSS3
Org_num: 49808
All begin ACOMICROBIO_LOCUS, ACOMICROBIO_NCLOACGD_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 658 | 39 aa hypothetical protein | |||
| 427 | R | Vpa2141ORF13340P (99% identity) | VspSS3ORF430P | |
| 428 | S | S.VpaG855ORF10860P (90% identity) | S.VspSS3ORF430P | |
| 429 | AAA domain | |||
| 430 | M | M.VpaVP17ORF14050P (99% identity) | M.VspSS3ORF430P | |
| 663 | Nicotinamide-nucleotide amidohydrolase PncC | |||
| 674 | 409 aa hypothetical protein | |||
| ??? | M | M.ValFA2ORF50P (97% identity) | M.VspSS3ORF435P | |
| 437 | S | S.VspSS3ORF760P (53% identity) | S.VspSS3ORF435P | |
| 678 | 364 aa hypothetical protein | |||
| 438 | R | VpaLVP2ORF5170P (95% identity) | VspSS3ORF435P | |
| 680 | 258 aa hypothetical protein | |||
| 1112 | 313 aa hypothetical protein | |||
| ??? | M | M.VcaIFL1ORF28420P (98% identity) | M.VspSS3ORF760P | |
| 762 | S | S.VspSS3ORF435P (53% identity) | S.VspSS3ORF760P | |
| 1116 | 278 aa hypothetical protein | |||
| 763 | R | Vca4131ORF19065P (98% identity) | VspSS3ORF760P | |
| 1118 | 258 aa hypothetical protein | |||
| 1702 | GTPase subunit of restriction | |||
| 1703 | S | S.Vhaf4ORFEP (70% identity) | S.VspSS3ORF1704P | |
| 1704 | M | M.Vhaf4ORFEP (97% identity) | M.VspSS3ORF1704P | |
| 2588 | 131 aa hypothetical protein | |||
| 2589 | 38 aa hypothetical protein | |||
| 2590 | 49 aa hypothetical protein | |||
| 2591 | 122 aa hypothetical protein | |||
| 1705 | R | Vsi48ORF8520P (98% identity) | VspSS3ORF1704P | |
| 1706 | Type III restriction enzyme | |||
| 1731 | viral genome integration into host DNA | |||
| 1732 | R | Vvu33147ORF5100P (97% identity) | VspSS3ORF1735P | |
| 2638 | 651 aa hypothetical protein | |||
| 2639 | 458 aa hypothetical protein | |||
| 1733 | nuclease of the RecB family | |||
| 1734 | S | S.Vne12702ORF13495P (94% identity) | S.VspSS3ORF1735P | |
| 1735 | M | M.Vne12702ORF13495P (68% identity) | M.VspSS3ORF1735P | |
| 1736 | COG0286 Type I restriction-modification system | |||
| 3493 | 463 aa hypothetical protein | |||
| 2358 | R | VspG11AORF127P (96% identity) | VspSS3ORF2360P | |
| 2359 | S | S.VcrED395ORF13460P (52% identity) | S.VspSS3ORF2360P | |
| 2360 | M | M.VhaE385ORFDP (91% identity) | M2.VspSS3ORF2360P | |
| 2361 | M | M1.VcaBoB90ORF5840P (99% identity) | M1.VspSS3ORF2360P | |
| 2362 | Type III restriction enzyme | |||
| 3685 | 153 aa hypothetical protein | |||
| ??? | M | M.VcaV1IV (97% identity) | M.VspSS3ORF2481P | |
| 2482 | S | S.VcaV1IV (60% identity) | S.VspSS3ORF2481P | |
| 2483 | R | VcaV1IVP (100% identity) | VspSS3ORF2481P | |
| 2484 | Phage integrase family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 267 | AAA domain | |||
| 268 | M | M.VspHDamP (100% identity) | GATC | M.VspSS3DamP |
| 269 | Belongs to the ribulose-phosphate 3-epimerase | |||
| 2376 | 457 aa hypothetical protein | |||
| 1567 | M | M.Vco1ORF11060P (75% identity) | M.VspSS3ORF1567P | |
| 2378 | 442 aa hypothetical protein | |||