Desulfonema limicola 5ac10 |
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Putative Desulfonema limicola 5ac10 RM systems
Ref: Schnaars,V. et al. Microb Physiol, 1-20 (2021) In press
REBASE ref # 31941
Complete sequence: 6,908,045 bp
GenBank #: CP061799
REBASE acronym: Dli5ac10
Org_num: 47221
All begin dnl_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3290 | HTH-type transcription regulator | |||
| 3300 | M | M.AspY33ORFBP (73% identity) | M.Dli5ac10ORF3300P | |
| 3310 | S | S2.Bsp10303ORFAP (60% identity) | S1.Dli5ac10ORF3300P | |
| 3320 | S | S2.TlaWSORF15330P (48% identity) | S2.Dli5ac10ORF3300P | |
| 3330 | R | Fsp34673ORFHP (71% identity) | Dli5ac10ORF3300P | |
| 3340 | Uncharacterized protein | |||
| 6440 | Uncharacterized protein | |||
| 6450 | S | S.Cfe23ORF24115P (23% identity) | S.Dli5ac10ORF6460P | |
| 6460 | M | M.Psp1bORF2509P (19% identity) | M.Dli5ac10ORF6460P | |
| 6470 | Uncharacterized protein | |||
| 9180 | Uncharacterized protein | |||
| 9190 | M | M.Twi6702ORF1487P (68% identity) | M.Dli5ac10ORF9190P | |
| 9200 | S | S.KmiKO408ORF25425P (29% identity) | S.Dli5ac10ORF9190P | |
| 9210 | Uncharacterized protein | |||
| 17250 | AAA ATPase-like domain-containing protein | |||
| 17260 | R | MboBA1ORF1196P (64% identity) | Dli5ac10ORF17320P | |
| 17270 | Uncharacterized protein | |||
| 17280 | AAA ATPase-like domain-containing protein | |||
| 17290 | Uncharacterized protein | |||
| 17300 | p-loop domain-containing protein | |||
| 17310 | S | S.PspN3WORF24150P (37% identity) | S.Dli5ac10ORF17320P | |
| 17320 | M | M.AfeITV01ORF12060P (65% identity) | M.Dli5ac10ORF17320P | |
| 17330 | AAA ATPase-like domain-containing protein | |||
| 20760 | Uncharacterized protein | |||
| 20770 | R | Esp20GORFAP (74% identity) | Dli5ac10ORF20790P | |
| 20780 | S | S.DspN47ORF1610P (39% identity) | S.Dli5ac10ORF20790P | |
| 20790 | M | M.CbaA209ORF6655P (83% identity) | M.Dli5ac10ORF20790P | |
| 20800 | Carboxymuconolactone decarboxylase family | |||
| 25280 | Rhomboid family protein | |||
| 25290 | S | S.Csp7D4C2ORF4050P (22% identity) | S.Dli5ac10ORF25300P | |
| 25300 | M | M.Dma2077ORF31620P (78% identity) | M.Dli5ac10ORF25300P | |
| 25310 | Uncharacterized protein | |||
| 25320 | R | Dma2077ORF31620P (76% identity) | Dli5ac10ORF25300P | |
| 25330 | DHH phosphoesterase domain-containing protein | |||
| 27820 | Uncharacterized protein | |||
| 27830 | R | GsuAM1ORF9200P (63% identity) | Dli5ac10ORF27860P | |
| 27840 | DUF4160 | |||
| 27850 | DUF2442 | |||
| 27860 | M | M.DauHRMORF14690P (73% identity) | M.Dli5ac10ORF27860P | |
| 27870 | S | S1.HaeGOM5ORF17820P (33% identity) | S.Dli5ac10ORF27860P | |
| 27880 | Uncharacterized protein | |||
| 34730 | TonB-dependent receptor | |||
| 34740 | R | Pdo12392ORFBP (63% identity) | Dli5ac10ORF34770P | |
| 34750 | S | S.Gst53ORF4810P (35% identity) | S.Dli5ac10ORF34770P | |
| 34760 | Nucleotidyltransferase substrate binding family | |||
| 34770 | M | M.Pdo12392ORFBP (73% identity) | M.Dli5ac10ORF34770P | |
| 34780 | Ribosome biogenesis GTPase | |||
| 46390 | Four helix bundle protein | |||
| 46400 | S | S.Rsl19594ORF4465P (44% identity) | S.Dli5ac10ORF46420P | |
| 46410 | Uncharacterized protein | |||
| 46420 | M | M.Bsp14AI (75% identity) | M.Dli5ac10ORF46420P | |
| 46430 | Uncharacterized protein | |||
| 47240 | Uncharacterized protein | |||
| 47250 | R | MspFTZ2ORF3600P (74% identity) | Dli5ac10ORF47270P | |
| 47260 | S | S.Sgl8271I (34% identity) | S.Dli5ac10ORF47270P | |
| 47270 | SAM-dependent DNA methylase | |||
| 49780 | Pyridoxal-dependent decarboxylase pyridoxal | |||
| 49790 | M | M.Ssp7502ORF3616P (56% identity) | M.Dli5ac10ORF49790P | |
| 49800 | S | S1.Ssp7502ORF3616P (34% identity) | S.Dli5ac10ORF49790P | |
| 49810 | Uncharacterized protein | |||
| 49820 | PIN domain-containing protein | |||
| 49830 | Uncharacterized protein | |||
| 49840 | R | NspHC41ORF9285P (64% identity) | Dli5ac10ORF49790P | |
| 49850 | DUF45 | |||
| 50900 | HTH-type transcription regulator | |||
| 50910 | M | M.NhaLW7ORF16160P (62% identity) | M.Dli5ac10ORF50910P | |
| 50920 | S | S.Msp11bORFAP (50% identity) | S1.Dli5ac10ORF50910P | |
| 50930 | S | S.FcoFCOF2ORF11425P (46% identity) | S2.Dli5ac10ORF50910P | |
| 50940 | DUF262 | |||
| 50950 | DUF262 and DUF1524 | |||
| 50960 | R | Nsp26ORF21230P (61% identity) | Dli5ac10ORF50910P | |
| 50970 | DUF45 | |||
| 58590 | DNA-binding HTH domain-containing protein, | |||
| 58600 | S | S.BceDSE10ORF2269P (30% identity) | S.Dli5ac10ORF58600P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2450 | Uncharacterized protein | |||
| ??? | M | M.Dli5ac10ORF22420AP (69% identity) | M.Dli5ac10ORF2460P | |
| 2480 | SAM-dependent methyltransferase | |||
| 2470 | SAM-dependent methyltransferase | |||
| 2480 | M | M.LspHRD7ORF1410P (68% identity) | M.Dli5ac10ORF2480P | |
| 2500 | ABC transporter, solute-binding protein | |||
| 4070 | NTP hydrolase p-loop-containing | |||
| ??? | M | M.Tsu2489II (57% identity) | M.Dli5ac10ORF4080P | |
| 4090 | Fur family transcriptional regulator | |||
| 4250 | Transcriptional regulator, TetR-type | |||
| 4260 | RM | Asps16ORFCP (58% identity) | Dli5ac10ORF4270P | |
| 4270 | M | M.Dma2077ORF8170P (71% identity) | M.Dli5ac10ORF4270P | |
| 4280 | Universal stress protein A | |||
| 5380 | Phosphoadenosine phosphosulfate reductase | |||
| 5390 | R | PmeZS3ORF12965P (53% identity) | Dli5ac10ORF5390P | |
| 5400 | Uncharacterized protein | |||
| 11400 | Imidazole glycerol phosphate synthase | |||
| 11410 | M | M.FphFAJORF1949P (60% identity) | M.Dli5ac10ORF11410P | |
| 11420 | DUF4435 | |||
| 11440 | DNA translocase domain-containing protein, | |||
| 11450 | M | M.Tli06511DndDP (35% identity) | M.Dli5ac10DndDP | |
| 11460 | Rossmann-like alpha/beta/alpha sandwich | |||
| 11450 | DNA sulfur modification protein | |||
| 11460 | M | M.Tli06511DndCP (32% identity) | M.Dli5ac10DndCP | |
| 11470 | Uncharacterized protein | |||
| 11470 | Uncharacterized protein | |||
| 11480 | M | M.TboBBSDndCP (21% identity) | M.Dli5ac10DndC2P | |
| 11490 | DUF4357 | |||
| 13740 | UDP-glucose 6-dehydrogenase | |||
| 13750 | M | M.CthGBORF1575P (37% identity) | M.Dli5ac10ORF13750P | |
| 13760 | Superoxide dismutase | |||
| 15360 | AAA ATPase-like domain-containing protein | |||
| 15370 | M | M.Dpe11002ORF2376P (67% identity) | M.Dli5ac10ORF15370P | |
| 15380 | Uncharacterized protein | |||
| 19560 | AbrB/MazE domain-containing protein | |||
| 19570 | RM | Dli5ac10ORF19630P (45% identity) | Dli5ac10ORF19570P | |
| 19580 | Type I restriction enzyme R protein N-terminal | |||
| 19580 | Type I restriction enzyme R protein N-terminal | |||
| 19590 | V | V.PspQ818ORF4585P (45% identity) | V.Dli5ac10ORF19600P | |
| 19600 | M | M.MyuLY01ORF4265P (59% identity) | M.Dli5ac10ORF19600P | |
| 19610 | Two component system histidine kinase | |||
| 19620 | Uncharacterized protein | |||
| 19630 | RM | Dli5ac10ORF19570P (45% identity) | Dli5ac10ORF19630P | |
| 19640 | Bifunctional riboflavin kinase/FMN | |||
| 20210 | CULT domain-containing protein | |||
| 20220 | M | M.FpsTRORFLP (55% identity) | M.Dli5ac10ORF20220P | |
| 20230 | R | PspF4M1ORF16375P (76% identity) | Dli5ac10ORF20220P | |
| 20240 | Serine/threonine phosphatase, PP2C-family | |||
| 22330 | NTP transferase domain-containing protein, HD | |||
| ??? | M | M.Dli5ac10ORF2460P (29% identity) | M.Dli5ac10ORF22420BP | |
| 22350 | Uncharacterized protein | |||
| 22360 | Uncharacterized protein | |||
| 22370 | toxin-antitoxin system, toxin | |||
| 22380 | Uncharacterized protein | |||
| 22390 | Uncharacterized protein | |||
| 22400 | Uncharacterized protein | |||
| 22410 | Uncharacterized protein | |||
| 22420 | M | M.Dli5ac10ORF2460P (69% identity) | M.Dli5ac10ORF22420AP | |
| 22440 | R | TspKTORF250P (70% identity) | Dli5ac10ORF22420P | |
| 22450 | Uncharacterized protein | |||
| 22930 | Uncharacterized protein | |||
| 22940 | M | M.GprBW2ORF4590P (33% identity) | M.Dli5ac10ORF22940P | |
| 22950 | Uncharacterized protein | |||
| 27920 | Uncharacterized protein | |||
| 27930 | M | M.TspTG218ORF7180P (56% identity) | M.Dli5ac10ORF27930P | |
| 27940 | R | Lsp902ORF22230P (58% identity) | Dli5ac10ORF27930P | |
| 27950 | ABC transporter, periplasmatic binding | |||
| 29850 | Uncharacterized protein | |||
| 29860 | M | M.Dma2077ORF85990P (69% identity) | M.Dli5ac10ORF29860P | |
| 29870 | Pyruvate, phosphate dikinase | |||
| 31290 | DUF3795 | |||
| 31300 | RM | FspCS20ORF5370P (30% identity) | Dli5ac10ORF31300P | |
| 31310 | toxin-antitoxin system, toxin | |||
| 32550 | Uncharacterized protein | |||
| 32560 | RM | Dli5ac10ORF57570P (54% identity) | Dli5ac10ORF32560P | |
| 32570 | TonB-dependent receptor | |||
| 32780 | M | M.BlpI (63% identity) | M.Dli5ac10ORF32780P | |
| 32790 | R | Ssp7003ORF13700P (70% identity) | Dli5ac10ORF32780P | |
| 32800 | SEC-C motif-containing protein | |||
| 32920 | Isocitrate dehydrogenase | |||
| 32930 | M | M.Msp7113ORF4726P (43% identity) | M.Dli5ac10ORF32930P | |
| 32940 | R | Csp7103ORFYP (50% identity) | Dli5ac10ORF32930P | |
| 32950 | Uncharacterized protein | |||
| 33150 | Uncharacterized protein | |||
| 33160 | RM | Pag758ORF1363P (67% identity) | Dli5ac10ORF33160P | |
| 33170 | immunoglobulin-like fold-containing | |||
| 34870 | Amidopeptidase | |||
| 34880 | R | KstMBR1ORF2616P (69% identity) | Dli5ac10ORF34890P | |
| 34890 | M | M.DspBuS5ORF872P (81% identity) | M.Dli5ac10ORF34890P | |
| 34900 | Uncharacterized protein | |||
| 34930 | Uncharacterized protein | |||
| 34940 | R | CbaCRORF2163P (80% identity) | Dli5ac10ORF34950P | |
| 34950 | M | M.CbaCRORF2163P (73% identity) | M.Dli5ac10ORF34950P | |
| 34960 | Alanine racemase | |||
| 35590 | Uncharacterized protein | |||
| 35600 | M | M.PspSCADCORF209235P (88% identity) | M.Dli5ac10ORF35600P | |
| 35610 | R | SacSBORF2042P (84% identity) | Dli5ac10ORF35600P | |
| 35620 | Uncharacterized protein | |||
| 37270 | Adenylyl/guanylyl cyclase domain-containing | |||
| 37280 | M | M.Aba4572ORF10460P (72% identity) | M.Dli5ac10ORF37280P | |
| 37290 | R | Aba4572ORF10460P (77% identity) | Dli5ac10ORF37280P | |
| 37310 | EamA domain-containing protein | |||
| 37750 | Major facilitator superfamily transporter | |||
| 37760 | RM | GspMT6ORF14915P (51% identity) | Dli5ac10ORF37760P | |
| 37770 | 4Fe-4S ferredoxin iron-sulfur binding | |||
| 40070 | Alpha/beta hydrolase fold-containing protein | |||
| 40080 | M | M.Hma5501ORF1506P (73% identity) | M.Dli5ac10ORF40080P | |
| 40090 | R | Hma5501ORF1506P (69% identity) | Dli5ac10ORF40080P | |
| 40100 | Uncharacterized protein | |||
| 43210 | Uncharacterized protein | |||
| 43220 | M | M.Adu3ORF6540P (68% identity) | M.Dli5ac10ORF43220P | |
| 43230 | Restriction endonuclease type II | |||
| 43230 | Restriction endonuclease type II | |||
| 43240 | M | M.KstCSTR1ORF28030P (54% identity) | M.Dli5ac10ORF43240P | |
| 43260 | High-affinity branched-chain amino acid | |||
| 45210 | Schlafen and ATP-dependent DNA helicase | |||
| 45220 | RM | MblMV1ORF16165P (48% identity) | Dli5ac10ORF45220P | |
| 45230 | DUF1016 | |||
| 48090 | p-loop domain-containing protein | |||
| 48100 | RM | Fpl60112ORF8785P (62% identity) | Dli5ac10ORF48100P | |
| 48110 | p-loop domain-containing protein | |||
| 49560 | Uncharacterized protein | |||
| 49570 | R | Dma2077ORF74250P (72% identity) | Dli5ac10ORF49580P | |
| 49580 | M | M.Dma2077ORF74250P (80% identity) | M.Dli5ac10ORF49580P | |
| 49590 | Two component system response | |||
| 53220 | Phosphoenolpyruvate-dependent sugar | |||
| 53230 | RM | Dco13527ORFKP (67% identity) | Dli5ac10ORF53230P | |
| 53240 | Uncharacterized protein | |||
| 55490 | Uncharacterized protein | |||
| 55500 | M | M.Dma2077ORF72710P (78% identity) | M.Dli5ac10ORF55500P | |
| 55510 | R | Dma2077ORF72710P (77% identity) | Dli5ac10ORF55500P | |
| 55520 | Uncharacterized protein | |||
| 57170 | aminohydrolases N-terminal domain-containing | |||
| 57180 | M | M.FliBUZ3ORF6897P (68% identity) | M.Dli5ac10ORF57180P | |
| 57190 | R | Ael3563ORF18665P (51% identity) | Dli5ac10ORF57180P | |
| 57200 | Cupin 2 domain-containing protein | |||
| 57560 | Uncharacterized protein | |||
| 57570 | RM | Dli5ac10ORF32560P (54% identity) | Dli5ac10ORF57570P | |
| 57580 | Uncharacterized protein | |||
| 60880 | Valine--tRNA ligase | |||
| 60890 | M | M.PamM71ORF13875P (64% identity) | M.Dli5ac10ORF60890P | |
| 60900 | DUF488 | |||
| 64050 | Peptidase, M48 family | |||
| 64060 | M | M.BstZI (55% identity) | M.Dli5ac10ORF64060P | |
| 64070 | R | Nte100ORF609P (47% identity) | Dli5ac10ORF64060P | |
| 64080 | 578 aa hypothetical protein BA862_05485 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21160 | PIN domain-containing protein | |||
| 21170 | R | GbrR4ORF1901P (49% identity) | Dli5ac10ORF21180P | |
| 21180 | M | M.McaGBS15ORF1510P (60% identity) | M.Dli5ac10ORF21180P | |
| 21190 | SIR2-like domain-containing protein | |||
| 21560 | Uncharacterized protein | |||
| 21570 | R | SspGrORF2865P (84% identity) | Dli5ac10ORF21590P | |
| 21580 | Virulence protein RhuM family protein | |||
| 21590 | M | M.MhiM3ORF682P (59% identity) | M.Dli5ac10ORF21590P | |
| 21600 | Ketose-bisphosphate aldolase family protein | |||
| 23630 | Uncharacterized protein | |||
| 23640 | M | M.Jsp173ORF11960P (48% identity) | M.Dli5ac10ORF23640P | |
| 23650 | R | Fsi4947ORF1780P (72% identity) | Dli5ac10ORF23640P | |
| 23660 | Single Cache domain-containing protein | |||
| 32830 | ABC transporter, ATP-binding protein | |||
| 32840 | M | M2.HspKM1WORFDP (23% identity) | M.Dli5ac10ORF32840P | |
| 32850 | R | HspKM1WORFDP (68% identity) | Dli5ac10ORF32840P | |
| 32860 | Trm112p-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6470 | Uncharacterized protein | |||
| 6480 | R | Sor351McrCP (11% identity) | Dli5ac10McrCP | |
| 6490 | R | Vco14McrBP (19% identity) | Dli5ac10McrBP | |
| 6500 | Type I restriction endonuclease | |||