Escherichia coli RIVM_C030197 |
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Putative Escherichia coli RIVM_C030197 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,256,191 bp
GenBank #: CP068824
REBASE acronym: Eco30197
Org_num: 46786
All begin JNN63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21055 | restriction endonuclease | |||
| ??? | M | M.EcoSC054ORF4200P (100% identity) | GGYANNNNNGTNG | M.Eco30197ORF21060P |
| 21065 | S | S.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | S.Eco30197ORF21060P |
| 21070 | R | Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | Eco30197ORF21060P |
| 21075 | endoribonuclease SymE | |||
| 22530 | AAA family ATPase | |||
| 22535 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco30197ORF22540P |
| 22540 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco30197ORF22540P |
| 22545 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco30197ORF22540P |
| 22550 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1830 | cell division protein DamX | |||
| 1835 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco30197DamP |
| 1840 | ribulose-phosphate 3-epimerase | |||
| 2365 | DUF2556 family protein | |||
| 2370 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco30197ORF2370P |
| 2375 | DNA-binding transcriptional regulator Fis | |||
| 10085 | phosphohydrolase | |||
| 10090 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.Eco30197DcmP |
| 10095 | V | V.SsoSE61DcmP (100% identity) | V.Eco30197DcmP | |
| 10100 | drug/metabolite exporter YedA | |||
| 14775 | LexA family transcriptional regulator | |||
| 14780 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco30197ORF14780P |
| 14785 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9875 | shufflon system plasmid conjugative transfer | |||
| 9880 | R | EcoH117ORF26340P (100% identity) | Eco30197ORF9885P | |
| 9885 | M | M.Sensp14178ORF9290P (100% identity) | M.Eco30197ORF9885P | |
| 9890 | integrase arm-type DNA-binding domain-containing | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14570 | isocitrate dehydrogenase | |||
| 14575 | R | EfeEF02ORF213200P (100% identity) | YCGR | Eco30197ORF14575P |
| 14580 | site-specific DNA recombinase | |||