Escherichia albertii Sample 166 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia albertii Sample 166 RM systems
Ref: Wang,H. et al. unpublished
REBASE ref # 31829
| Sequence length: | GenBank #: | |
| Chromosome: | 4,819,744 bp | CP070292 |
| plasmid pESA139_1: | 107,432 bp | CP070293 |
| plasmid pESA139_3: | 98,546 bp | CP070295 |
REBASE acronym: Eal166
Org_num: 46581
All begin JRC43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4360 | transposase | |||
| 4365 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eal166ORF4370P |
| 4370 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eal166ORF4370P |
| 4375 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eal166ORF4370P |
| 4380 | AAA family ATPase | |||
| 6145 | IS66-like element ISEc23 family transposase | |||
| 6150 | R | EalKF1ORF3355P (100% identity) | ACAYNNNNCTG | Eal166ORF6160P |
| 6155 | S | S.Sen12509ORF5865P (99% identity) | ACAYNNNNCTG | S.Eal166ORF6160P |
| ??? | M | M.EcoVL02ORF7370P (100% identity) | ACAYNNNNCTG | M.Eal166ORF6160P |
| 6165 | 293 aa hypothetical protein | |||
| 19925 | Fic family protein | |||
| 19930 | R | EalLWGAORF20085P (100% identity) | Eal166ORF19935P | |
| 19935 | M | M.EalKF1ORF1498P (100% identity) | M.Eal166ORF19935P | |
| ??? | S | S.EalLWGAORF20085P (100% identity) | S.Eal166ORF19935P | |
| 19945 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.Eco4356DamP (100% identity) | GATC | M.Eal166DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2350 | DUF2556 family protein | |||
| 2355 | M | M.Eco4356ORFEP (100% identity) | M.Eal166ORF2355P | |
| 2360 | DNA-binding transcriptional regulator Fis | |||
| 4060 | BREX-1 system phosphatase PglZ type A | |||
| 4065 | RM | EcoDEC14DORF5061P (100% identity) | Eal166ORF4065P | |
| 4070 | BREX system P-loop protein BrxC | |||
| 7015 | thermonuclease family protein | |||
| 7020 | M | M.YpsF1ORFCP (100% identity) | M.Eal166ORF7020P | |
| 7025 | 55 aa hypothetical protein | |||
| 9360 | integrase | |||
| 9365 | M | M.EalEA04ORF8780P (100% identity) | GATC | M.Eal166ORF9365P |
| 9370 | NinE family protein | |||
| 9860 | TrmB family transcriptional regulator | |||
| 9865 | M | M.EcoS7438ORFNP (100% identity) | M.Eal166ORF9865P | |
| 9880 | DUF3927 family protein | |||
| 9980 | phosphohydrolase | |||
| 9985 | M | M.EalKF1DcmP (100% identity) | CCWGG | M.Eal166DcmP |
| 9990 | V | V.Eco4356DcmP (100% identity) | V.Eal166DcmP | |
| 9995 | drug/metabolite exporter YedA | |||
| 18250 | flagellar hook-basal body complex protein | |||
| 18255 | M | M.Eal165ORF18150P (100% identity) | M.Eal166ORF18255P | |
| 18260 | R | EalLWGAORF18350P (100% identity) | Eal166ORF18255P | |
| 18265 | flagellar biosynthesis anti-sigma factor FlgM | |||
| plasmid pESA139_1 | ||||
| 23855 | 97 aa hypothetical protein | |||
| 23860 | M | M.Xca80ORFEP (100% identity) | M.Eal166ORF23860P | |
| 23865 | 73 aa hypothetical protein | |||
| plasmid pESA139_3 | ||||
| 25120 | 85 aa hypothetical protein | |||
| 25125 | M | M.EfeD053ORF22855P (100% identity) | M.Eal166ORF25125P | |
| 25130 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pESA139_1 | ||||
| 23705 | mobilization protein MobX | |||
| 23710 | R | SspS13ORF650P (100% identity) | Eal166ORF23765P | |
| 23715 | site-specific DNA-methyltransferase | |||
| 23720 | IS6-like element IS26 family transposase | |||
| 23725 | replication initiation protein | |||
| 23730 | DNA-binding protein | |||
| 23735 | 49 aa hypothetical protein | |||
| 23740 | 179 aa hypothetical protein | |||
| 23745 | 149 aa hypothetical protein | |||
| 23750 | 180 aa hypothetical protein | |||
| 23755 | 135 aa hypothetical protein | |||
| 23760 | 67 aa hypothetical protein | |||
| 23765 | M | M.SspS13ORF650P (78% identity) | M.Eal166ORF23765P | |
| 23770 | IS6 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19945 | endoribonuclease SymE | |||
| 19950 | R | EalTBGAGmrSDP (100% identity) | Eal166GmrSDP | |
| 19955 | GntR family transcriptional regulator | |||