Escherichia coli RIVM_C028497 |
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Putative Escherichia coli RIVM_C028497 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,086,007 bp
GenBank #: CP068809
REBASE acronym: Eco28497
Org_num: 46771
All begin JNN39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15055 | transcription factor | |||
| 15060 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco28497ORF15060P |
| 15065 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.Eco28497ORF15060P |
| 15070 | DUF4433 domain-containing protein | |||
| 15075 | macro domain-containing protein | |||
| 15080 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco28497ORF15060P |
| 15085 | M48 family metallopeptidase | |||
| 20750 | DUF262 domain-containing protein | |||
| 20755 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco28497ORF20760P |
| 20760 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco28497ORF20760P |
| 20765 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco28497ORF20760P |
| 20770 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1685 | cell division protein DamX | |||
| 1690 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco28497DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco28497ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 6495 | ANR family transcriptional regulator | |||
| 6500 | M | M1.Ecoi127aORF1280P (100% identity) | M1.Eco28497ORF6500P | |
| 6505 | VRR-NUC domain-containing protein | |||
| 6510 | M | M.EcoSTEC640ORF7045P (100% identity) | M2.Eco28497ORF6500P | |
| 6515 | 106 aa hypothetical protein | |||
| 9765 | phosphohydrolase | |||
| 9770 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco28497DcmP |
| 9775 | V | V.SflC32DcmP (74% identity) | V.Eco28497DcmP | |
| 9780 | drug/metabolite exporter YedA | |||
| 20480 | phage holin, lambda family | |||
| 20485 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco28497ORF20485P | |
| 20490 | 67 aa hypothetical protein | |||
| 20525 | LexA family transcriptional regulator | |||
| 20530 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco28497ORF20530P |
| 20535 | PerC family transcriptional regulator | |||
| 20935 | HNH endonuclease | |||
| 20940 | R | Ecoi127aORF4076P (100% identity) | Eco28497ORF20940P | |
| 20945 | 59 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20770 | endoribonuclease SymE | |||
| 20775 | R | EcoRb3GmrSDP (100% identity) | Eco28497GmrSDP | |
| 20780 | 26 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13650 | NinE family protein | |||
| 13655 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco28497ORF13655P |
| 13660 | recombination protein NinB | |||