Escherichia coli RIVM_C017887 |
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Putative Escherichia coli RIVM_C017887 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,227,631 bp
GenBank #: CP068799
REBASE acronym: Eco17887
Org_num: 46759
All begin JNN46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15435 | transcription factor | |||
| 15440 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco17887ORF15440P |
| 15445 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.Eco17887ORF15440P |
| 15450 | DUF4433 domain-containing protein | |||
| 15455 | macro domain-containing protein | |||
| 15460 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco17887ORF15440P |
| 15465 | M48 family metallopeptidase | |||
| 21140 | DUF262 domain-containing protein | |||
| 21145 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco17887ORF21150P |
| 21150 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco17887ORF21150P |
| 21155 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco17887ORF21150P |
| 21160 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1680 | cell division protein DamX | |||
| 1685 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco17887DamP |
| 1690 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco17887ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 6495 | ANR family transcriptional regulator | |||
| 6500 | M | M1.Ecoi127aORF1280P (100% identity) | M1.Eco17887ORF6500P | |
| 6505 | VRR-NUC domain-containing protein | |||
| 6510 | M | M.EcoSTEC640ORF7045P (100% identity) | M2.Eco17887ORF6500P | |
| 6515 | 106 aa hypothetical protein | |||
| 10070 | phosphohydrolase | |||
| 10075 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco17887DcmP |
| 10080 | V | V.SflC32DcmP (74% identity) | V.Eco17887DcmP | |
| 10085 | drug/metabolite exporter YedA | |||
| 20870 | phage holin, lambda family | |||
| 20875 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco17887ORF20875P | |
| 20880 | 67 aa hypothetical protein | |||
| 20915 | LexA family transcriptional regulator | |||
| 20920 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco17887ORF20920P |
| 20925 | PerC family transcriptional regulator | |||
| 21325 | HNH endonuclease | |||
| 21330 | R | Ecoi127aORF4076P (100% identity) | Eco17887ORF21330P | |
| 21335 | 59 aa hypothetical protein | |||
| 21625 | conjugal transfer protein TraG N-terminal | |||
| 21630 | M | M.EcosS3ORF15775P (100% identity) | M.Eco17887ORF21630P | |
| 21635 | R | EcosS3ORF15775P (100% identity) | Eco17887ORF21630P | |
| 21640 | 527 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21160 | endoribonuclease SymE | |||
| 21165 | R | EcoRb3GmrSDP (100% identity) | Eco17887GmrSDP | |
| 21170 | 26 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14030 | NinE family protein | |||
| 14035 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco17887ORF14035P |
| 14040 | recombination protein NinB | |||