Escherichia coli C439 |
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Putative Escherichia coli C439 RM systems
Ref: Tran,T. unpublished
REBASE ref # 31814
Complete sequence: 4,657,966 bp
GenBank #: CP046025
REBASE acronym: EcoC439
Org_num: 46535
All begin GJH08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19270 | Mrr restriction system protein | |||
| ??? | R | EcoW25113ORF11385P (100% identity) | AACNNNNNNGTGC | EcoC439ORF19280P |
| 19280 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoC439ORF19280P |
| 19285 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoC439ORF19280P |
| 19290 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1640 | cell division protein DamX | |||
| 1645 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC439DamP |
| 1650 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 domain-containing protein | |||
| 2290 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoC439ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 8750 | phosphohydrolase | |||
| 8755 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoC439DcmP |
| 8760 | V | V.SflFF64DcmP (100% identity) | V.EcoC439DcmP | |
| 8765 | drug/metabolite exporter YedA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12950 | isocitrate dehydrogenase | |||
| 12955 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoC439ORF12955P |
| 12960 | site-specific DNA recombinase | |||
| 19265 | GTPase | |||
| 19270 | R | SenHNK130MrrP (100% identity) | EcoC439MrrP | |
| 19275 | type I restriction-modification system | |||
| 19290 | endoribonuclease SymE | |||
| 19295 | R | SenHNK130McrBP (100% identity) | EcoC439McrBP | |
| 19300 | R | SenHNK130McrCP (100% identity) | EcoC439McrCP | |
| 19305 | 906 aa hypothetical protein | |||