Photobacterium damselae subsp. damselae RM-71 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Photobacterium damselae subsp. damselae RM-71 RM systems
Ref: Osorio,C.R. unpublished
REBASE ref # 10721
| Sequence length: | GenBank #: | |
| chromosome I: | 3,163,175 bp | CP070624 |
| chromosome II: | 1,277,949 bp | CP070625 |
| plasmid pPHDD1: | 153,429 bp | CP070626 |
REBASE acronym: PdaRM71
Org_num: 48629
All begin A0J47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome II | ||||
| 16000 | amidohydrolase | |||
| 16005 | M | M.PdaXP11ORF855P (97% identity) | M.PdaRM71ORF16005P | |
| 16010 | S | S.CspM166ORF11760P (48% identity) | S1.PdaRM71ORF16005P | |
| 16015 | S | S2.Pda7592ORF19175P (98% identity) | S2.PdaRM71ORF16005P | |
| 16020 | R | Pda7592ORF19175P (99% identity) | PdaRM71ORF16005P | |
| 16025 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 2655 | AAA family ATPase | |||
| 2660 | M | M.PdaXP11DamP (100% identity) | GATC | M.PdaRM71DamP |
| 2665 | DUF2970 domain-containing protein | |||
| chromosome II | ||||
| 16075 | alpha/beta fold hydrolase | |||
| 16080 | M | M.Pda9633ORF20225P (99% identity) | M.PdaRM71ORF16080P | |
| 16085 | HD domain-containing protein | |||
| 16250 | ATP-binding protein | |||
| 16255 | M | M.Mmo2824ORFJP (88% identity) | M.PdaRM71ORF16255P | |
| 16260 | R | Mmo2824ORFJP (86% identity) | PdaRM71ORF16255P | |
| plasmid pPHDD1 | ||||
| 20130 | PAAR domain-containing protein | |||
| 20135 | RM | PdaDORF50P (100% identity) | PdaRM71ORF20135P | |
| 20140 | replication initiation protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 13235 | class I SAM-dependent methyltransferase | |||
| 13240 | R | Pda1608ORF11720P (98% identity) | PdaRM71ORF13240P | |
| 13245 | histidine-histamine antiporter | |||
| chromosome II | ||||
| 19845 | 188 aa hypothetical protein | |||
| 19850 | R | Pda1605McrBP (100% identity) | PdaRM71McrBP | |
| 19855 | R | Pda11648McrCP (96% identity) | PdaRM71McrCP | |
| 19860 | (deoxy)nucleoside triphosphate | |||