Escherichia coli 65COLEC |
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Putative Escherichia coli 65COLEC RM systems
Ref: Ding,Y. et al. bioRxiv (2021)
REBASE ref # 31807
| Sequence length: | GenBank #: | |
| Chromosome: | 4,722,363 bp | CP070914 |
| plasmid p65COLEC-1: | 217,265 bp | CP070915 |
| plasmid p65COLEC-2: | 106,065 bp | CP070916 |
REBASE acronym: Eco65C
Org_num: 46514
All begin JR892_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19310 | adenine/cytosine-specific restriction | |||
| 19315 | R | EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | Eco65CORF19320P |
| 19320 | M | M.EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | M.Eco65CORF19320P |
| 19325 | S | S.EcoPE15ORF18630P (100% identity) | CCANNNNNNNRTAYG | S.Eco65CORF19320P |
| 19330 | endoribonuclease SymE | |||
| 19550 | DUF4942 domain-containing protein | |||
| 19555 | M | M.SsoSE61ORF6540P (14% identity) | M.Eco65CORF19565AP | |
| 19560 | IS3-like element IS3 family transposase | |||
| 19565 | M | M.EcoPSJ29ORF37430P (100% identity) | M.Eco65CORF19565BP | |
| 19570 | S | S.EcoPSJ29ORF37430P (100% identity) | S.Eco65CORF19565P | |
| 19575 | R | EcoPSJ29ORF37430P (100% identity) | Eco65CORF19565P | |
| 19585 | NADPH-dependent aldehyde reductase Ahr | |||
| 20640 | IS3-like element ISSen4 family transposase | |||
| 20645 | R | EcotcmA3ORF16550P (100% identity) | Eco65CORF20665P | |
| 20650 | DNA-processing protein DprA | |||
| 20655 | RecQ family ATP-dependent DNA helicase | |||
| 20660 | S | S.EcotcmA3ORF16550P (100% identity) | S.Eco65CORF20665P | |
| 20665 | M | M.Pre393ORF2750P (100% identity) | M.Eco65CORF20665P | |
| 20670 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco65CDamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2330 | DUF2556 family protein | |||
| 2335 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco65CORF2335P |
| 2340 | DNA-binding transcriptional regulator Fis | |||
| 8830 | phosphohydrolase | |||
| 8835 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco65CDcmP |
| 8840 | V | V.SsoST152DcmP (100% identity) | V.Eco65CDcmP | |
| 8845 | drug/metabolite exporter YedA | |||
| 12845 | 343 aa hypothetical protein | |||
| 12850 | M | M.EcoMSI001ORF17885P (100% identity) | M.Eco65CORF12850P | |
| 12855 | phage replication protein | |||
| 14780 | replication endonuclease | |||
| 14785 | M | M.Sen6020ORF258P (100% identity) | GATC | M.Eco65CORF14785P |
| 14790 | TraR/DksA family transcriptional regulator | |||
| 19530 | HNH endonuclease | |||
| 19535 | R | EcoPSJ29ORF37350P (100% identity) | Eco65CORF19535P | |
| 19540 | McrC family protein | |||
| plasmid p65COLEC-1 | ||||
| 23045 | 56 aa hypothetical protein | |||
| 23050 | M | M.Sens770ORF21675P (100% identity) | M.Eco65CORF23050P | |
| 23055 | thermonuclease family protein | |||
| 23575 | DNA-binding protein | |||
| 23580 | M | M.Sens770ORF22135P (100% identity) | M.Eco65CORF23580P | |
| 23585 | 273 aa hypothetical protein | |||
| plasmid p65COLEC-2 | ||||
| 24095 | IS1 family transposase | |||
| 24100 | R | EcoPSJ29ORF43810P (100% identity) | GCWGC | Eco65CORF24100P |
| 24105 | helix-turn-helix transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12750 | isocitrate dehydrogenase | |||
| 12755 | R | Ecos671McrCP (100% identity) | Eco65CMcrCP | |
| 12760 | R | EcoGR02AMcrBP (100% identity) | Eco65CMcrBP | |
| 12765 | tail fiber assembly protein | |||
| 19305 | GTPase | |||
| 19310 | R | EcoPSJ29MrrP (99% identity) | Eco65CMrrP | |
| 19315 | type I restriction-modification system | |||
| 19330 | endoribonuclease SymE | |||
| 19335 | R | EcoPSJ29McrBP (100% identity) | Eco65CMcrB2P | |
| 19340 | R | EcoPSJ29McrCP (100% identity) | Eco65CMcrC2P | |
| 19535 | HNH endonuclease | |||
| 19540 | R | EcoPSJ29McrC2P (100% identity) | Eco65CMcrC3P | |
| 19545 | R | EcoPSJ29McrB2P (100% identity) | Eco65CMcrB3P | |
| 19550 | DUF4942 domain-containing protein | |||