Escherichia coli 88COLEC |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 88COLEC RM systems
Ref: Ding,Y. et al. bioRxiv (2021)
REBASE ref # 31807
| Sequence length: | GenBank #: | |
| Chromosome: | 4,892,887 bp | CP070906 |
| plasmid p88COLEC-1: | 142,545 bp | CP070907 |
| plasmid p88COLEC-2: | 111,012 bp | CP070908 |
REBASE acronym: Eco88C
Org_num: 46517
All begin JR901_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13820 | GTPase family protein | |||
| 13825 | M | M.EcoNT1N34ORFBP (99% identity) | M.Eco88CORF13825P | |
| 13830 | S | S.Eco8523ORF23720P (66% identity) | S.Eco88CORF13825P | |
| 13835 | R | SdyFF51ORF19255P (99% identity) | Eco88CORF13825P | |
| 13840 | IS5-like element ISKpn26 family transposase | |||
| plasmid p88COLEC-2 | ||||
| 24355 | DNA polymerase III subunit theta | |||
| 24360 | M | M.EcoNT1N34ORFBP (100% identity) | M.Eco88CORF24360P | |
| 24365 | S | S.Cfr61II (79% identity) | S.Eco88CORF24360P | |
| 24370 | R | Eco21170ORF28000P (99% identity) | Eco88CORF24360P | |
| 24375 | DNA modification methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1865 | cell division protein DamX | |||
| 1870 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco88CDamP |
| 1875 | ribulose-phosphate 3-epimerase | |||
| 2420 | DUF2556 family protein | |||
| 2425 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco88CORF2425P |
| 2430 | DNA-binding transcriptional regulator Fis | |||
| 4575 | helix-turn-helix transcriptional regulator | |||
| 4580 | R | EcoTHO010ORF9060P (100% identity) | Eco88CORF4580P | |
| 4585 | 536 aa hypothetical protein | |||
| 5720 | adhesin-like autotransporter YpjA/EhaD | |||
| 5725 | R | Sens24184ORF5380P (100% identity) | C | Eco88CORF5725P |
| 5730 | DNA primase | |||
| 9050 | phosphohydrolase | |||
| 9055 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco88CDcmP |
| 9060 | V | V.SflFF64DcmP (100% identity) | V.Eco88CDcmP | |
| 9065 | drug/metabolite exporter YedA | |||
| 12760 | DUF1317 family protein | |||
| ??? | M | M.Eco1842ORF9510P (100% identity) | M.Eco88CORF12765P | |
| 12770 | DUF4060 family protein | |||
| 19400 | 100 aa hypothetical protein | |||
| 19405 | R | EcoW619ORFAP (96% identity) | Eco88CORF19405P | |
| 19410 | HNH endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19385 | DEAD/DEAH box helicase family protein | |||
| 19390 | M | M.EcoXH990ORF24545P (100% identity) | M.Eco88CORF19390P | |
| 19395 | R | Ecos19ORF20250P (100% identity) | Eco88CORF19390P | |
| 19400 | 100 aa hypothetical protein | |||
| plasmid p88COLEC-1 | ||||
| 23715 | maturation control protein | |||
| 23720 | R | Sen28322ORF25755P (38% identity) | AGACC | Eco88CORF23735BP |
| 23725 | IS4-like element ISVsa5 family transposase | |||
| 23730 | R | Sen28322ORF25755P (61% identity) | AGACC | Eco88CORF23735AP |
| 23735 | M | M.Sen68045ORF16165P (99% identity) | AGACC | M.Eco88CORF23735P |
| 23740 | modulator protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19590 | DUF1127 domain-containing protein | |||
| 19595 | R | EcoXH990GmrSDP (100% identity) | Eco88CGmrSDP | |
| 19600 | endoribonuclease SymE | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p88COLEC-2 | ||||
| 24415 | 76 aa hypothetical protein | |||
| 24420 | M | M.Sso524ORF460P (100% identity) | M.Eco88CORF24420P | |
| 24425 | 269 aa hypothetical protein | |||