Shewanella species LC6 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shewanella species LC6 RM systems
Ref: Lizarraga,W.C. and Ramirez,P. unpublished
REBASE ref # 32379
| Sequence length: | GenBank #: | |
| Chromosome: | 5,044,620 bp | CP043902 |
| plasmid pSX1_LC6: | 355,688 bp | CP043903 |
| plasmid pSX2_LC6: | 119,324 bp | CP043904 |
REBASE acronym: SspLC6
Org_num: 49163
All begin FJD32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 285 | 82 aa hypothetical protein | |||
| ??? | R | Sxi8M38ORFEP (99% identity) | SspLC6ORF320P | |
| 295 | glycosyltransferase family 2 protein | |||
| 300 | glycosyltransferase family 2 protein | |||
| 305 | 230 aa hypothetical protein | |||
| 310 | IS1634-like element ISShes12 family transposase | |||
| 315 | 108 aa hypothetical protein | |||
| 320 | M | M.Sxi8M38ORFEP (98% identity) | M.SspLC6ORF320P | |
| 325 | S | S1.NspAD6ORF5015P (49% identity) | S.SspLC6ORF320P | |
| 330 | AAA family ATPase | |||
| 2415 | helix-turn-helix domain-containing protein | |||
| 2420 | R | Vch702ORFDP (96% identity) | SspLC6ORF2425P | |
| 2425 | M | M.VchVC22ORF1110P (100% identity) | M.SspLC6ORF2425P | |
| 2430 | S | S.PmiJ024ORF135P (97% identity) | S.SspLC6ORF2425P | |
| 2435 | 265 aa hypothetical protein | |||
| 11665 | AAA domain-containing protein | |||
| 11670 | R | SspANAORF2027P (98% identity) | SspLC6ORF11675P | |
| 11675 | M | M.SspANAORF2027P (97% identity) | M.SspLC6ORF11675P | |
| 11680 | S | S.Ach8003I (50% identity) | S.SspLC6ORF11675P | |
| 11685 | 81 aa hypothetical protein | |||
| 17395 | restriction endonuclease | |||
| 17400 | R | Vsp1105ORF3940P (100% identity) | SspLC6ORF17415P | |
| 17405 | Fic family protein | |||
| 17410 | S | S.Eco0031ORFEP (72% identity) | S.SspLC6ORF17415P | |
| 17415 | M | M.Vch69ORF364P (98% identity) | M.SspLC6ORF17415P | |
| 17420 | WYL domain-containing protein | |||
| plasmid pSX1_LC6 | ||||
| 22900 | tyrosine-type recombinase/integrase | |||
| 22905 | M | M.VowVC2WORF8535P (98% identity) | M.SspLC6ORF22905P | |
| 22910 | restriction endonuclease subunit S | |||
| 22915 | AAA family ATPase | |||
| 22920 | tetratricopeptide repeat protein | |||
| 22925 | HrgA protein | |||
| 22930 | R | VchN1ORF17170P (99% identity) | SspLC6ORF22905P | |
| 22935 | helix-turn-helix transcriptional regulator | |||
| 23435 | DUF3368 domain-containing protein | |||
| 23440 | M | M.Spu200ORF3878P (96% identity) | M.SspLC6ORF23440P | |
| 23445 | S | S.SdeNi13ORF3935P (80% identity) | S.SspLC6ORF23440P | |
| 23450 | Fic family protein | |||
| 23455 | IS4-like element IS10A family transposase | |||
| 23460 | Fic family protein | |||
| 23465 | R | Vsp1107ORF3525P (98% identity) | SspLC6ORF23440P | |
| 23470 | DNA replication terminus site-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1445 | AAA family ATPase | |||
| ??? | M | M.SspLZH2DamP (100% identity) | GATC | M.SspLC6DamP |
| 1455 | DUF2970 domain-containing protein | |||
| 4345 | GIY-YIG nuclease family protein | |||
| 4355 | M | M.Ssp41ORF6900P (52% identity) | M.SspLC6ORF4355P | |
| 4360 | helix-turn-helix transcriptional regulator | |||
| 9240 | 78 aa hypothetical protein | |||
| 9245 | M | M.Sxi6416ORF6115P (98% identity) | M.SspLC6ORF9245P | |
| 9250 | 112 aa hypothetical protein | |||
| 21075 | 76 aa hypothetical protein | |||
| 21080 | M | M.Ssp354ORF14165P (100% identity) | M.SspLC6ORF21080P | |
| 21085 | histidine kinase | |||
| 21110 | 206 aa hypothetical protein | |||
| 21115 | R | Ssp354ORF14190P (100% identity) | DSCGDG | SspLC6ORF21115P |
| 21120 | Fic family protein | |||
| plasmid pSX1_LC6 | ||||
| 23250 | 95 aa hypothetical protein | |||
| 23255 | M | M.SbaFHM2ORF22525P (100% identity) | M.SspLC6ORF23255P | |
| 23260 | 142 aa hypothetical protein | |||
| 24355 | 135 aa hypothetical protein | |||
| 24360 | M | M.SxiFH1ORF21955P (99% identity) | M.SspLC6ORF24360P | |
| 24365 | 115 aa hypothetical protein | |||
| plasmid pSX2_LC6 | ||||
| 24820 | 82 aa hypothetical protein | |||
| 24825 | M | M.Vsp1107ORF10290P (98% identity) | M.SspLC6ORF24825P | |
| 24830 | 83 aa hypothetical protein | |||
| 25175 | 100 aa hypothetical protein | |||
| 25180 | M | M.Cfr243ORFBP (99% identity) | M.SspLC6ORF25180P | |
| 25185 | 143 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17390 | phosphohydrolase | |||
| 17395 | R | Vsp1107MrrP (100% identity) | SspLC6MrrP | |
| 17400 | type I restriction endonuclease subunit R | |||