Escherichia coli XH992 |
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Putative Escherichia coli XH992 RM systems
Ref: Hua,X. and Yu,Y. unpublished
REBASE ref # 24129
| Sequence length: | GenBank #: | |
| Chromosome: | 5,144,002 bp | CP019392 |
| plasmid pXH992_1: | 248,458 bp | CP019394 |
REBASE acronym: EcoXH992
Org_num: 46817
All begin BW707_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 420 | restriction endonuclease | |||
| 425 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoXH992ORF430P |
| 430 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoXH992ORF430P |
| 435 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoXH992ORF430P |
| 440 | 113 aa hypothetical protein | |||
| 9165 | 112 aa hypothetical protein | |||
| 9170 | R | EcoP19598ORF4755P (100% identity) | CACNNNNNRTAT | EcoXH992ORF9180P |
| 9175 | S | S.EcoP19598ORF4755P (100% identity) | CACNNNNNRTAT | S.EcoXH992ORF9180P |
| 9180 | M | M.EcoP19598ORF4755P (100% identity) | CACNNNNNRTAT | M.EcoXH992ORF9180P |
| 9185 | 621 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6600 | cell division protein DamX | |||
| 6605 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoXH992DamP |
| 6610 | ribulose-phosphate 3-epimerase | |||
| 7170 | transporter | |||
| 7175 | M | M.Ecost20ORFAP (100% identity) | ATGCAT | M.EcoXH992ORF7175P |
| 7180 | Fis family transcriptional regulator | |||
| 9745 | superoxide dismutase | |||
| 9750 | R | SenS530DptFP (100% identity) | EcoXH992DptFP | |
| 9755 | DNA phosphorothioation-dependent restriction | |||
| 9750 | DNA phosphorothioation-dependent restriction | |||
| 9755 | R | SenI222DptGP (100% identity) | EcoXH992DptGP | |
| 9755 | DNA phosphorothioation-dependent restriction | |||
| 9760 | R | SenS530DptHP (100% identity) | EcoXH992DptHP | |
| 9765 | 396 aa hypothetical protein | |||
| 9770 | 512 aa hypothetical protein | |||
| 9775 | M | M.SenS530DndEP (100% identity) | M.EcoXH992DndEP | |
| 9780 | DNA sulfur modification protein DndD | |||
| 9775 | DNA sulfur modification protein DndE | |||
| 9780 | M | M.SenS530DndDP (100% identity) | M.EcoXH992DndDP | |
| 9785 | 544 aa hypothetical protein | |||
| 9780 | DNA sulfur modification protein DndD | |||
| 9785 | M | M.SenS530DndCP (100% identity) | M.EcoXH992DndCP | |
| 9790 | DNA sulfur modification protein DndB | |||
| 9785 | 544 aa hypothetical protein | |||
| 9790 | M | M.SenS530DndBP (100% identity) | M.EcoXH992DndBP | |
| 9795 | DNA-binding protein | |||
| 11575 | 75 aa hypothetical protein | |||
| 11580 | M | M.EcoS1ORF3140P (100% identity) | M.EcoXH992ORF11580P | |
| 11585 | endonuclease | |||
| 12420 | 64 aa hypothetical protein | |||
| 12425 | M | M.EcoLS45ORF6985P (100% identity) | M.EcoXH992ORF12425P | |
| 12430 | transcriptional regulator | |||
| 19995 | EamA family transporter | |||
| 20000 | V | V.SsoSE61DcmP (100% identity) | V.EcoXH992DcmP | |
| 20005 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.EcoXH992DcmP |
| 20010 | phosphohydrolase | |||
| 25310 | 290 aa hypothetical protein | |||
| 25315 | M | M.EcoHZ13ORF18475P (100% identity) | GATC | M.EcoXH992ORF25315P |
| 25320 | 140 aa hypothetical protein | |||
| plasmid pXH992_1 | ||||
| 27800 | 439 aa hypothetical protein | |||
| 27805 | M | M.YpsF1ORFCP (100% identity) | M.EcoXH992ORF27805P | |
| 27810 | nuclease | |||
| 28540 | 108 aa hypothetical protein | |||
| 28545 | M | M.YpsF1ORFBP (100% identity) | M.EcoXH992ORF28545P | |
| 28550 | 202 aa hypothetical protein | |||
| 28665 | DNA-binding protein | |||
| 28670 | M | M.YpsF1ORFDP (100% identity) | M.EcoXH992ORF28670P | |
| 28675 | 277 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 415 | GTPase | |||
| 420 | R | Ssp28760MrrP (100% identity) | EcoXH992MrrP | |
| 425 | type I restriction-modification system | |||
| 440 | 113 aa hypothetical protein | |||
| 445 | R | SenHNK130McrBP (100% identity) | EcoXH992McrBP | |
| 450 | R | SenHNK130McrCP (100% identity) | EcoXH992McrCP | |