Escherichia coli XH988 |
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Putative Escherichia coli XH988 RM systems
Ref: Hua,X. and Yu,Y. unpublished
REBASE ref # 24129
| Sequence length: | GenBank #: | |
| chromosome XH988: | 4,782,521 bp | CP019355 |
| plasmid pXH988_1: | 265,134 bp | CP019353 |
| plasmid pXH988_2: | 107,661 bp | CP019354 |
REBASE acronym: EcoXH988
Org_num: 46816
All begin BWZ24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome XH988 | ||||
| 23825 | restriction endonuclease subunit M | |||
| 23830 | M | M.EcoL65ORF18400P (100% identity) | M.EcoXH988ORF23830P | |
| 23835 | S | S.EcoL65ORF18400P (100% identity) | S.EcoXH988ORF23830P | |
| 23840 | R | EcoL65ORF18400P (100% identity) | EcoXH988ORF23830P | |
| 23850 | aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome XH988 | ||||
| 4040 | protein DamX | |||
| 4045 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXH988DamP |
| 4050 | ribulose-phosphate 3-epimerase | |||
| 4635 | transporter | |||
| 4640 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoXH988ORF4640P |
| 4645 | Fis family transcriptional regulator | |||
| 11770 | phosphohydrolase | |||
| 11775 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoXH988DcmP |
| 11780 | V | V.SsoSE61DcmP (100% identity) | V.EcoXH988DcmP | |
| 11785 | EamA family transporter | |||
| 16385 | LexA family transcriptional regulator | |||
| 16390 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoXH988ORF16390P |
| 16395 | 164 aa hypothetical protein | |||
| 18265 | 273 aa hypothetical protein | |||
| 18270 | M | M.EfeC18ORF7705P (100% identity) | M.EcoXH988ORF18270P | |
| 18275 | 75 aa hypothetical protein | |||
| 20135 | protein ninE | |||
| 20140 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoXH988ORF20140P |
| 20145 | 146 aa hypothetical protein | |||
| 23795 | HNH endonuclease | |||
| 23800 | R | SdyFF10ORF20055P (100% identity) | EcoXH988ORF23800P | |
| 23805 | restriction endonuclease | |||
| plasmid pXH988_1 | ||||
| 160 | 108 aa hypothetical protein | |||
| 165 | M | M.YpsF1ORFBP (100% identity) | M.EcoXH988ORF165P | |
| 170 | 202 aa hypothetical protein | |||
| 295 | DNA-binding protein | |||
| 300 | M | M.YpsF1ORFDP (100% identity) | M.EcoXH988ORF300P | |
| 305 | 277 aa hypothetical protein | |||
| 940 | 439 aa hypothetical protein | |||
| 945 | M | M.YpsF1ORFCP (100% identity) | M.EcoXH988ORF945P | |
| 950 | nuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome XH988 | ||||
| 16185 | isocitrate dehydrogenase | |||
| 16190 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoXH988ORF16190P |
| 16195 | DNA-invertase | |||
| 23800 | restriction endonuclease | |||
| 23805 | R | SdyFF10McrCP (100% identity) | EcoXH988McrCP | |
| 23810 | R | SflSTLE4McrBP (100% identity) | EcoXH988McrBP | |
| 23815 | transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pXH988_2 | ||||
| 1860 | 269 aa hypothetical protein | |||
| 1865 | M | M.Sso524ORF460P (100% identity) | M.EcoXH988ORF1865P | |
| 1870 | 76 aa hypothetical protein | |||