Escherichia coli RUT3575 |
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Putative Escherichia coli RUT3575 RM systems
Ref: Moreno-Mingorance,A. et al. unpublished
REBASE ref # 31856
| Sequence length: | GenBank #: | |
| Chromosome: | 4,762,142 bp | CP048010 |
| plasmid p3575-CTX-M: | 76,937 bp | CP048011 |
| plasmid p3575-NDM-5: | 93,625 bp | CP048012 |
REBASE acronym: Eco3575
Org_num: 46793
All begin GW576_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6065 | IS1 family transposase | |||
| 6070 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco3575ORF6080P |
| 6075 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco3575ORF6080P |
| ??? | M | M.EcoVL02ORF7370P (100% identity) | ACAYNNNNCTG | M.Eco3575ORF6080P |
| 6085 | transposase | |||
| 13965 | transcription factor | |||
| 13970 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco3575ORF13970P |
| 13975 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Eco3575ORF13970P |
| 13980 | DUF4433 domain-containing protein | |||
| 13985 | macro domain-containing protein | |||
| 13990 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Eco3575ORF13970P |
| 13995 | M48 family metallopeptidase | |||
| plasmid p3575-CTX-M | ||||
| 23465 | IS1 family transposase | |||
| 23470 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Eco3575ORF23480P |
| 23475 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco3575ORF23480P |
| 23480 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Eco3575ORF23480P |
| 23485 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2280 | cell division protein DamX | |||
| 2285 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco3575DamP |
| 2290 | ribulose-phosphate 3-epimerase | |||
| 2905 | DUF2556 domain-containing protein | |||
| 2910 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco3575ORF2910P |
| 2915 | DNA-binding transcriptional regulator Fis | |||
| 9305 | phosphohydrolase | |||
| 9310 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco3575DcmP |
| 9315 | V | V.SsoSE61DcmP (100% identity) | V.Eco3575DcmP | |
| 9320 | drug/metabolite exporter YedA | |||
| 21975 | 345 aa hypothetical protein | |||
| 21980 | M | M.EcosE2ORF21575P (100% identity) | M.Eco3575ORF21980P | |
| 21985 | 68 aa hypothetical protein | |||
| plasmid p3575-CTX-M | ||||
| 23370 | 73 aa hypothetical protein | |||
| 23375 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco3575ORF23375P |
| 23380 | 102 aa hypothetical protein | |||
| plasmid p3575-NDM-5 | ||||
| 23690 | IS1 family transposase | |||
| ??? | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.Eco3575ORF23695P |
| 23700 | R | Sen23701ORF24490P (100% identity) | CCWGG | Eco3575ORF23695P |
| 23705 | recombinase family protein | |||
| 23855 | 102 aa hypothetical protein | |||
| 23860 | M | M.SenST46ORF25580P (100% identity) | M.Eco3575ORF23860P | |
| 23865 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13285 | isocitrate dehydrogenase | |||
| 13290 | R | EcosEC27McrCP (100% identity) | Eco3575McrCP | |
| 13295 | R | EcoteDMcrBP (100% identity) | Eco3575McrBP | |
| 13300 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15160 | replication endonuclease | |||
| 15165 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco3575ORF15165P |
| 15170 | TraR/DksA family transcriptional regulator | |||