Escherichia coli J53-p1-pV-hybrid-1 |
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Putative Escherichia coli J53-p1-pV-hybrid-1 RM systems
Ref: Qu,J. and Ou,H.-Y. unpublished
REBASE ref # 31832
| Sequence length: | GenBank #: | |
| Chromosome: | 4,682,670 bp | CP068706 |
| plasmid p1-pV-hybrid-1: | 324,396 bp | CP068707 |
REBASE acronym: EcoJ53p1
Org_num: 46650
All begin JK375_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18920 | adenine/cytosine-specific restriction | |||
| 18925 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | EcoJ53p1ORF18930P |
| 18930 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoJ53p1ORF18930P |
| 18935 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoJ53p1ORF18930P |
| 18940 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1230 | cell division protein DamX | |||
| 1235 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoJ53p1DamP |
| 1240 | ribulose-phosphate 3-epimerase | |||
| 1855 | DUF2556 family protein | |||
| 1860 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoJ53p1ORF1860P |
| 1865 | DNA-binding transcriptional regulator Fis | |||
| 8350 | phosphohydrolase | |||
| 8355 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoJ53p1DcmP |
| 8360 | V | V.SflFF64DcmP (100% identity) | V.EcoJ53p1DcmP | |
| 8365 | drug/metabolite exporter YedA | |||
| plasmid p1-pV-hybrid-1 | ||||
| 22800 | 1126 aa hypothetical protein | |||
| 22805 | M | M.Sen20597ORF9240P (100% identity) | M.EcoJ53p1ORF22805P | |
| 22810 | 168 aa hypothetical protein | |||
| 22880 | IS5 family transposase | |||
| 22885 | R | Sen20597ORF9325P (100% identity) | EcoJ53p1ORF22890P | |
| 22890 | M | M.Ksp1927ORF27750P (100% identity) | M.EcoJ53p1ORF22890P | |
| 22895 | DNA replication protein DnaC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12520 | isocitrate dehydrogenase | |||
| 12525 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoJ53p1ORF12525P |
| 12530 | site-specific DNA recombinase | |||
| 18915 | GTPase | |||
| 18920 | R | SenHNK130MrrP (100% identity) | EcoJ53p1MrrP | |
| 18925 | type I restriction-modification system | |||
| 18940 | endoribonuclease SymE | |||
| 18945 | R | SenHNK130McrBP (100% identity) | EcoJ53p1McrBP | |
| 18950 | R | SenHNK130McrCP (100% identity) | EcoJ53p1McrCP | |
| 18955 | 906 aa hypothetical protein | |||