Helicobacter pylori LIM-002 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori LIM-002 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,615,900 bp
GenBank #: CP051540
REBASE acronym: HpyLIM2
Org_num: 48205
All begin HG575_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2405 | RNA degradosome polyphosphate kinase | |||
| 2415 | S | S.HpySWT06ORF2365P (97% identity) | CCANNNNNNTTA | S.HpyLIM2III |
| 2420 | M | M.HpyP006ORF2125P (96% identity) | CCANNNNNNTTA | M.HpyLIM2III |
| 2425 | R | HpyKH19ORFG1P (92% identity) | CCANNNNNNTTA | HpyLIM2IIIP |
| 2430 | motility associated factor glycosyltransferase | |||
| 2670 | phosphatase PAP2 family protein | |||
| 2675 | M | M.HpyMT5124ORF3635P (88% identity) | M.HpyLIM2ORF2675P | |
| 2680 | S | S.HpyLIM2ORF2970P (82% identity) | S.HpyLIM2ORF2675P | |
| 2685 | R | HpyPE124ORF2405P (94% identity) | HpyLIM2ORF2675P | |
| 2690 | hydroxyethylthiazole kinase | |||
| 2965 | cadmium-translocating P-type ATPase | |||
| 2970 | S | S.HpyKG5XII (95% identity) | S.HpyLIM2ORF2970P | |
| 2975 | outer membrane beta-barrel protein HofF | |||
| 6785 | nickel-binding protein HpnL | |||
| 6790 | S | S.Hpy166ORF7350P (97% identity) | S.HpyLIM2ORF6790P | |
| 6795 | formyltetrahydrofolate deformylase | |||
| 7295 | FAD-dependent thymidylate synthase | |||
| 7300 | S | S.HpyK037XV (97% identity) | S.HpyLIM2ORF7305P | |
| 7305 | M | M.HpyJ001VII (94% identity) | M.HpyLIM2ORF7305P | |
| 7310 | R | Hpy180ORF7835P (94% identity) | HpyLIM2ORF7305P | |
| 7315 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | site-specific DNA-methyltransferase | |||
| 265 | M | M.HpySP209VII (86% identity) | M.HpyLIM2ORF265P | |
| 270 | glycosyltransferase family 8 protein | |||
| 395 | site-specific DNA-methyltransferase | |||
| 400 | M | M.HpyPOR112VI (99% identity) | GATATC | M.HpyLIM2ORF400P |
| 405 | R | HpyR02VIIIP (100% identity) | GATATC | HpyLIM2ORF400P |
| 410 | site-specific DNA-methyltransferase | |||
| 410 | site-specific DNA-methyltransferase | |||
| 415 | M | M2.HpyI002III (99% identity) | GAAGA | M1.HpyLIM2VI |
| ??? | M | M1.HpyPE103VI (98% identity) | GAAGA | M2.HpyLIM2VI |
| 425 | R | HpyLIM10VIP (97% identity) | GAAGA | HpyLIM2VIP |
| 430 | copper response regulator transcription factor | |||
| 485 | DNA methyltransferase | |||
| 490 | M | M.HpyG003VIII (98% identity) | GANTC | M.HpyLIM2VII |
| 495 | R | HpyKA1VIIIP (96% identity) | GANTC | HpyLIM2VIIP |
| 500 | 92 aa hypothetical protein | |||
| 505 | agmatine deiminase family protein | |||
| 510 | M | M1.HpyC107VIII (98% identity) | CCTC | M1.HpyLIM2V |
| 515 | M | M2.HpyU003VP (99% identity) | CCTC | M2.HpyLIM2VP |
| 520 | R | HpyPE140VIP (97% identity) | CCTC | HpyLIM2VP |
| 525 | DNA cytosine methyltransferase | |||
| 725 | 337 aa hypothetical protein | |||
| 730 | M | M.HpyGCT55ORFNP (91% identity) | GATC | M.HpyLIM2VIII |
| 735 | alpha-1,2-fucosyltransferase | |||
| 1565 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyMT5124X (97% identity) | TCGA | M.HpyLIM2XI |
| 1575 | 204 aa hypothetical protein | |||
| 1575 | 204 aa hypothetical protein | |||
| ??? | R | HpyPE02ORF1650P (100% identity) | CCGG | HpyLIM2ORF1585P |
| 1585 | M | M.HpyU411V (99% identity) | CCGG | M.HpyLIM2ORF1585P |
| 1590 | AAA family ATPase | |||
| 2490 | Hop family outer membrane protein HopJ/HopK | |||
| 2495 | M | M.HpyGRE022II (97% identity) | ATTAAT | M.HpyLIM2II |
| 2500 | glycosyltransferase family 9 protein | |||
| 2505 | translational GTPase TypA | |||
| 2510 | DNA adenine methylase | |||
| 2505 | translational GTPase TypA | |||
| 2510 | M | M.HpySP325II (99% identity) | ACNGT | M.HpyLIM2XV |
| 2515 | R | HpyQ35ORFJP (99% identity) | ACNGT | HpyLIM2XVP |
| 2520 | DNA cytosine methyltransferase | |||
| 2515 | GIY-YIG nuclease family protein | |||
| 2520 | M | M.HpyJA110ORF2330P (94% identity) | M.HpyLIM2ORF2520P | |
| 2525 | catalase | |||
| 3465 | 3-5 exonuclease | |||
| 3470 | R | Hpy37ORF3085P (99% identity) | CCNNGG | HpyLIM2IVP |
| 3475 | M | M.HpyLI29II (100% identity) | CCNNGG | M.HpyLIM2IV |
| 3480 | 3-5 exonuclease | |||
| 3555 | SIR2 family protein | |||
| 3560 | RM | HpySP705ORF3205P (89% identity) | HpyLIM2ORF3560P | |
| 3565 | (Fe-S)-binding protein | |||
| 4220 | peptidoglycan DD-metalloendopeptidase family | |||
| 4225 | R | Hpy180ORF2515P (99% identity) | GTAC | HpyLIM2IXP |
| 4230 | M | M.Hpy180ORF2515P (99% identity) | GTAC | M.HpyLIM2IX |
| 4235 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4420 | flagellar hook protein FlgE | |||
| 4425 | R | HpyLIM7VIIIP (90% identity) | GTNNAC | HpyLIM2XP |
| ??? | M | M.HpyS298IV (97% identity) | GTNNAC | M.HpyLIM2X |
| 4435 | ATP-dependent helicase | |||
| 5300 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5305 | M | M.HpyPE107XV (99% identity) | TCNNGA | M.HpyLIM2XIII |
| 5310 | R | HpyH006ORF5175P (99% identity) | TCNNGA | HpyLIM2XIIIP |
| 5315 | Laminin subunit alpha-2 precursor | |||
| 5500 | 144 aa hypothetical protein | |||
| ??? | M | M.Hpy55ORF1135P (97% identity) | GCGC | M.HpyLIM2ORF5505P |
| 5510 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5790 | purine-nucleoside phosphorylase | |||
| 5795 | M | M.HpyCOL209XII (99% identity) | TCNGA | M.HpyLIM2XII |
| 5800 | R | HpyKG3XIIP (100% identity) | TCNGA | HpyLIM2XIIP |
| 5805 | purine-nucleoside phosphorylase | |||
| 6715 | type II restriction endonuclease | |||
| 6720 | R | HpyISR9ORF6700P (76% identity) | HpyLIM2ORF6720P | |
| 6725 | UDP-N-acetylmuramate dehydrogenase | |||
| 6985 | DNA polymerase I | |||
| 6990 | S | S.HpyF233ORFXP (63% identity) | S.HpyLIM2ORF6995P | |
| 6995 | RM | HpyTW09ORF6875P (97% identity) | HpyLIM2ORF6995P | |
| 7000 | ComF family protein | |||
| 7215 | SocA family protein | |||
| 7220 | RM | HpyAR4ORF7010P (88% identity) | HpyLIM2ORF7220P | |
| 7225 | 719 aa hypothetical protein | |||
| 7390 | 67 aa hypothetical protein | |||
| 7395 | M | M.HpyPE19VI (99% identity) | TGCA | M.HpyLIM2XIV |
| 7400 | R | HpyPE121XIP (99% identity) | TGCA | HpyLIM2XIVP |
| 7405 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 320 | biotin synthase | |||
| 325 | R | HpyPE103ORF6840P (88% identity) | HpyLIM2ORF330P | |
| 330 | M | M.HpyME41ORF6690P (96% identity) | M.HpyLIM2ORF330P | |
| 335 | DNA/RNA non-specific endonuclease | |||
| 385 | rod shape-determining protein MreC | |||
| 390 | R | HpyL019ORF6560P (92% identity) | HpyLIM2ORF395P | |
| 395 | M | M.HpyLIM2ORF410P (100% identity) | M.HpyLIM2ORF395P | |
| 400 | Dam family site-specific | |||
| 405 | EcoRV family type II restriction endonuclease | |||
| 410 | M | M.HpyLIM2ORF395P (100% identity) | M.HpyLIM2ORF410P | |
| 415 | site-specific DNA-methyltransferase | |||
| 7225 | 719 aa hypothetical protein | |||
| 7230 | R | HpyME41ORF7315P (95% identity) | HpyLIM2ORF7235P | |
| ??? | M | M.HpyPE121ORF7320P (96% identity) | M.HpyLIM2ORF7235P | |
| 7245 | ATP-dependent DNA helicase RecG | |||