Helicobacter pylori ASHA-006 |
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Putative Helicobacter pylori ASHA-006 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,616,651 bp
GenBank #: CP051511
REBASE acronym: HpyAs006
Org_num: 48200
All begin HGK51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2215 | RNA degradosome polyphosphate kinase | |||
| 2225 | S | S.HpyAR2VII (95% identity) | S.HpyAs006ORF2230P | |
| 2230 | M | M.HpyAs004ORF2240P (99% identity) | M.HpyAs006ORF2230P | |
| ??? | R | HpyAs004ORF2240P (98% identity) | HpyAs006ORF2230P | |
| 2245 | motility associated factor glycosyltransferase | |||
| 3855 | outer membrane beta-barrel protein HofF | |||
| 3860 | S | S.HpyU425ORF4215P (68% identity) | S.HpyAs006ORF3860P | |
| 3865 | cadmium-translocating P-type ATPase | |||
| 6910 | nickel-binding protein HpnL | |||
| 6915 | S | S.HpyAs010ORF6995P (98% identity) | GRNAANNNNNNNTTC | S.HpyAs006XIII |
| 6920 | formyltetrahydrofolate deformylase | |||
| 7405 | FAD-dependent thymidylate synthase | |||
| 7410 | S | S.HpyAs010ORF7495P (98% identity) | GARANNNNNNNTTC | S.HpyAs006XII |
| 7415 | CAAX protease | |||
| 7420 | M | M.HpyAs004XIII (99% identity) | GARANNNNNNNTTC | M.HpyAs006XII |
| 7425 | R | HpyPE19IXP (98% identity) | GARANNNNNNNTTC | HpyAs006XIIP |
| 7430 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyAS001ORF250P (99% identity) | CCTC | M1.HpyAs006IV |
| 250 | M | M2.HpyAS001ORF250P (99% identity) | CCTC | M2.HpyAs006IVP |
| 255 | R | Hpy20ORF220P (97% identity) | CCTC | HpyAs006IVP |
| 260 | site-specific DNA-methyltransferase | |||
| 255 | HNH endonuclease | |||
| 260 | M | M.HpyAs004X (100% identity) | GTSAC | M.HpyAs006IX |
| 265 | R | HpyAs004XP (100% identity) | GTSAC | HpyAs006IXP |
| 270 | sodium/proline symporter PutP | |||
| 420 | ACP S-malonyltransferase | |||
| 430 | R | HpyAs009ORF465P (98% identity) | GATC | HpyAs006VIIP |
| 435 | M | M.HpyAs009ORF465P (99% identity) | GATC | M.HpyAs006VII |
| 440 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1345 | exodeoxyribonuclease VII large subunit | |||
| 1350 | R | HpyAs004IVP (100% identity) | CCGG | HpyAs006IIIP |
| 1355 | M | M.HpySH011IV (99% identity) | CCGG | M.HpyAs006III |
| 1360 | AAA domain-containing protein | |||
| 1590 | polysaccharide deacetylase | |||
| 1595 | R | HpyAs004VIP (98% identity) | HpyAs006ORF1600P | |
| 1600 | M | M.HpyUM111ORF160P (40% identity) | M.HpyAs006ORF1600P | |
| 1605 | 125 aa hypothetical protein | |||
| 1795 | elongation factor 4 | |||
| 1800 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpyAs006ORF1800P | |
| 1805 | 133 aa hypothetical protein | |||
| 2305 | Hop family outer membrane protein HopJ/HopK | |||
| 2310 | M | M.HpySH014III (98% identity) | ATTAAT | M.HpyAs006ORF2310P |
| 2315 | glycosyltransferase family 9 protein | |||
| 2320 | translational GTPase TypA | |||
| 2325 | M | M.HpyAs004II (100% identity) | ACNGT | M.HpyAs006II |
| 2330 | R | HpyAs004IIP (100% identity) | ACNGT | HpyAs006IIP |
| 2335 | catalase | |||
| 4145 | restriction endonuclease subunit M | |||
| 4150 | M | M.HpysHP34ORF6260P (100% identity) | M.HpyAs006ORF4150P | |
| 4155 | R | HpyAs004ORF4300P (100% identity) | HpyAs006ORF4150P | |
| 4160 | phosphatase PAP2 family protein | |||
| 4410 | flagellar hook protein FlgE | |||
| ??? | R | HpySH011IXP (100% identity) | GTNNAC | HpyAs006VIIIP |
| ??? | M | M.HpyPU010XII (98% identity) | GTNNAC | M.HpyAs006VIII |
| 4425 | ATP-dependent helicase | |||
| 5130 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5135 | M | M.HpyPU006XII (98% identity) | TCNNGA | M.HpyAs006X |
| 5140 | R | HpyAs004XIP (99% identity) | TCNNGA | HpyAs006XP |
| 5145 | Laminin subunit alpha-2 precursor | |||
| 5325 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAs010ORF5530P (99% identity) | M.HpyAs006ORF5330P | |
| 5335 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6465 | DNA methyltransferase | |||
| 6470 | R | Hpy417ORF6645P (94% identity) | GANTC | HpyAs006VIP |
| 6475 | M | M.HpySORF7000P (99% identity) | GANTC | M.HpyAs006VI |
| 6480 | N-6 DNA methylase | |||
| 6475 | site-specific DNA-methyltransferase | |||
| 6480 | RM | HpyAs009ORF6580P (93% identity) | HpyAs006ORF6480P | |
| 6485 | carboxylating nicotinate-nucleotide | |||
| 6535 | copper response regulator transcription factor | |||
| 6540 | R | R1.Hpy225ORF1404P (98% identity) | GAAGA | HpyAs006VP |
| 6545 | M | M1.HpySH010VI (99% identity) | GAAGA | M1.HpyAs006V |
| 6550 | M | M.HpyPE11III (99% identity) | GAAGA | M2.HpyAs006V |
| 6555 | site-specific DNA-methyltransferase | |||
| 7115 | DNA polymerase I | |||
| 7120 | S | S.HpyAs002XIII (68% identity) | S.HpyAs006ORF7125P | |
| 7125 | RM | HpyAs009ORF7105P (99% identity) | HpyAs006ORF7125P | |
| 7130 | ComF family protein | |||
| 7330 | transcription termination/antitermination | |||
| 7335 | RM | HpySORF7805P (96% identity) | HpyAs006ORF7335P | |
| 7340 | DEAD/DEAH box helicase family protein | |||
| 7405 | FAD-dependent thymidylate synthase | |||
| 7410 | restriction endonuclease subunit S | |||
| 7510 | 67 aa hypothetical protein | |||
| 7515 | M | M.HpySH014XII (100% identity) | TGCA | M.HpyAs006XI |
| 7520 | R | Hpy417ORF7760P (100% identity) | TGCA | HpyAs006XIP |
| 7525 | 93 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6550 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpy169ORF6810P (98% identity) | M.HpyAs006ORF6555P | |
| 6565 | R | HpyAs004ORF6715P (99% identity) | HpyAs006ORF6555P | |
| 6570 | rod shape-determining protein MreC | |||
| 6620 | DNA/RNA non-specific endonuclease | |||
| 6625 | M | M.Hpy35ORF21558P (97% identity) | M.HpyAs006ORF6625P | |
| 6630 | R | HpyAS001ORF6745P (98% identity) | HpyAs006ORF6625P | |
| 6635 | biotin synthase | |||
| 7335 | class I SAM-dependent DNA methyltransferase | |||
| 7340 | R | HpySH010ORF7530P (97% identity) | HpyAs006ORF7345P | |
| ??? | M | M.HpySORF7815P (99% identity) | M.HpyAs006ORF7345P | |
| 7355 | ATP-dependent DNA helicase RecG | |||