Helicobacter pylori ASHA-010 |
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Putative Helicobacter pylori ASHA-010 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,635,086 bp
GenBank #: CP051508
REBASE acronym: HpyAs010
Org_num: 48203
All begin HG559_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2125 | RNA degradosome polyphosphate kinase | |||
| 2135 | S | S.HpyAs008XIV (100% identity) | S.HpyAs010ORF2140P | |
| 2140 | M | M.HpyAs008XIV (100% identity) | M.HpyAs010ORF2140P | |
| ??? | R | HpyAs008XIVP (99% identity) | HpyAs010ORF2140P | |
| 2155 | motility associated factor glycosyltransferase | |||
| 2385 | DNA cytosine methyltransferase | |||
| 2390 | M | M.HpyAs008XII (100% identity) | M.HpyAs010ORF2390P | |
| 2395 | S | S.HpyAs008XII (75% identity) | S.HpyAs010ORF2390P | |
| 2400 | R | HpyAs008XIIP (100% identity) | HpyAs010ORF2390P | |
| 2405 | hydroxyethylthiazole kinase | |||
| 2680 | cadmium-translocating P-type ATPase | |||
| 2685 | S | S.HpyBGR5XIV (95% identity) | S.HpyAs010ORF2685P | |
| 2690 | outer membrane beta-barrel protein HofF | |||
| 6990 | nickel-binding protein HpnL | |||
| 6995 | S | S.HpyAs008XVI (100% identity) | S.HpyAs010ORF6995P | |
| 7000 | formyltetrahydrofolate deformylase | |||
| 7480 | cagY like domain protein | |||
| 7485 | S | S.HpyAs008XIII (100% identity) | S.HpyAs010ORF7495P | |
| 7490 | CAAX protease | |||
| 7495 | M | M.HpyAs008XIII (100% identity) | M.HpyAs010ORF7495P | |
| 7500 | R | HpyAs008XIIIP (99% identity) | HpyAs010ORF7495P | |
| 7505 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyAs008VI (100% identity) | CCTC | M1.HpyAs010V |
| 250 | M | M2.HpyAs008VIP (100% identity) | CCTC | M2.HpyAs010VP |
| 255 | R | HpyAs008VIP (100% identity) | CCTC | HpyAs010VP |
| 260 | DNA cytosine methyltransferase | |||
| 440 | ACP S-malonyltransferase | |||
| 450 | R | HpyAs008VIIP (100% identity) | GATC | HpyAs010VIP |
| 455 | M | M.HpyAs008VII (100% identity) | GATC | M.HpyAs010VI |
| 460 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyAs008IX (100% identity) | TCGA | M.HpyAs010ORF1260P |
| 1265 | 204 aa hypothetical protein | |||
| 1265 | 204 aa hypothetical protein | |||
| 1270 | R | HpyAs008IVP (100% identity) | CCGG | HpyAs010ORF1275P |
| 1275 | M | M.HpyAs009VIII (100% identity) | CCGG | M.HpyAs010ORF1275P |
| 1280 | AAA domain-containing protein | |||
| 2215 | Hop family outer membrane protein HopJ/HopK | |||
| 2220 | M | M.HpyAs008III (100% identity) | ATTAAT | M.HpyAs010III |
| 2225 | glycosyltransferase family 9 protein | |||
| 2230 | translational GTPase TypA | |||
| 2235 | M | M.HpyAs008II (100% identity) | ACNGT | M.HpyAs010II |
| 2240 | R | HpyAs008IIP (100% identity) | ACNGT | HpyAs010IIP |
| 2245 | DNA cytosine methyltransferase | |||
| 2240 | GIY-YIG nuclease family protein | |||
| 2245 | M | M.HpyAs008ORF2225P (100% identity) | ACGT | M.HpyAs010ORF2245P |
| 2250 | R | HpyAs008ORF2225P (100% identity) | ACGT | HpyAs010ORF2245P |
| 2255 | catalase | |||
| 2375 | DNA-binding protein | |||
| 2380 | R | HpyAs008ORF2365P (100% identity) | HpyAs010ORF2385P | |
| 2385 | M | M.HpyK022ORF4175P (100% identity) | M.HpyAs010ORF2385P | |
| 2390 | type I restriction-modification system subunit | |||
| 3180 | 3-5 exonuclease | |||
| 3185 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyAs010IVP |
| 3190 | M | M.HpyAs008V (100% identity) | CCNNGG | M.HpyAs010IV |
| 3195 | 3-5 exonuclease | |||
| 3270 | 450 aa hypothetical protein | |||
| 3275 | RM | HpyAs008ORF3255P (100% identity) | HpyAs010ORF3275P | |
| 3280 | (Fe-S)-binding protein | |||
| 4455 | flagellar hook protein FlgE | |||
| 4460 | R | HpyAs008VIIIP (100% identity) | GTNNAC | HpyAs010VIIP |
| ??? | M | M.HpyAs008VIII (100% identity) | GTNNAC | M.HpyAs010VII |
| 4470 | ATP-dependent helicase | |||
| 5330 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5335 | M | M.HpyAs008X (100% identity) | TCNNGA | M.HpyAs010VIII |
| 5340 | R | HpyAs008XP (100% identity) | TCNNGA | HpyAs010VIIIP |
| 5345 | Laminin subunit alpha-2 precursor | |||
| 5525 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAs008ORF5480P (100% identity) | M.HpyAs010ORF5530P | |
| 5535 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5990 | HAD family hydrolase | |||
| 5995 | M | M.HpyAs008I (100% identity) | CATG | M.HpyAs010I |
| 6000 | IceA2 protein | |||
| 6695 | PDZ domain-containing protein | |||
| 6700 | R | HpyAs002VIIP (100% identity) | HpyAs010ORF6705P | |
| 6705 | M | M.HpyAs002VII (100% identity) | GANTC | M.HpyAs010ORF6705P |
| 6710 | N-6 DNA methylase | |||
| 6705 | site-specific DNA-methyltransferase | |||
| 6710 | RM | HpyAs008ORF6645P (91% identity) | HpyAs010ORF6710P | |
| 6715 | carboxylating nicotinate-nucleotide | |||
| 6775 | site-specific DNA-methyltransferase | |||
| 6780 | R | HpyAs008ORF6720P (100% identity) | HpyAs010ORF6785P | |
| 6785 | M | M.HpyAs008ORF6720P (100% identity) | M.HpyAs010ORF6785P | |
| 6790 | site-specific DNA-methyltransferase | |||
| 7185 | DNA polymerase I | |||
| 7190 | S | S.HpyC117ORF7300P (97% identity) | S.HpyAs010ORF7195P | |
| 7195 | RM | HpyAs008ORF7125P (100% identity) | HpyAs010ORF7195P | |
| 7200 | ComF family protein | |||
| 7400 | transcription termination/antitermination | |||
| 7405 | RM | HpyAs008ORF7335P (100% identity) | HpyAs010ORF7405P | |
| 7410 | DEAD/DEAH box helicase family protein | |||
| 7580 | 67 aa hypothetical protein | |||
| 7585 | M | M.HpyAs008XI (100% identity) | TGCA | M.HpyAs010IX |
| 7590 | R | HpyAs008XIP (100% identity) | TGCA | HpyAs010IXP |
| 7595 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6785 | Dam family site-specific | |||
| ??? | M | M.HpyPU001ORF6675P (97% identity) | M.HpyAs010ORF6790P | |
| 6800 | R | HpyAs008ORF6725P (100% identity) | HpyAs010ORF6790P | |
| 6805 | rod shape-determining protein MreC | |||
| 6850 | DNA/RNA non-specific endonuclease | |||
| 6855 | M | M.HpyAs008ORF6785P (100% identity) | M.HpyAs010ORF6855P | |
| 6860 | R | HpyAs008ORF6785P (100% identity) | HpyAs010ORF6855P | |
| 6865 | biotin synthase | |||
| 7405 | class I SAM-dependent DNA methyltransferase | |||
| 7410 | R | HpyAs008ORF7345P (100% identity) | HpyAs010ORF7415P | |
| ??? | M | M.HpyAs008ORF7345P (100% identity) | M.HpyAs010ORF7415P | |
| 7425 | ATP-dependent DNA helicase RecG | |||