Helicobacter pylori PUNO-001 |
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Putative Helicobacter pylori PUNO-001 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,644,092 bp
GenBank #: CP051502
REBASE acronym: HpyPU001
Org_num: 48222
All begin HG565_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | DNA cytosine methyltransferase | |||
| 2955 | M | M.HpySORF2560P (97% identity) | M.HpyPU001ORF2955P | |
| 2960 | S | S.HpyAs004ORF2790P (70% identity) | S.HpyPU001ORF2955P | |
| 2965 | R | HpyPU004XVP (97% identity) | HpyPU001ORF2955P | |
| 2970 | hydroxyethylthiazole kinase | |||
| 3245 | cadmium-translocating P-type ATPase | |||
| 3250 | S | S.HpyK035VII (78% identity) | S.HpyPU001ORF3250P | |
| 3255 | outer membrane beta-barrel protein HofF | |||
| 4765 | motility associated factor glycosyltransferase | |||
| 4770 | R | HpyPE111IIIP (94% identity) | HpyPU001ORF4775P | |
| 4775 | M | M.HpySORF2270P (96% identity) | M.HpyPU001ORF4775P | |
| 4780 | S | S.HpyK25ORF2475P (98% identity) | S.HpyPU001ORF4775P | |
| 4790 | RNA degradosome polyphosphate kinase | |||
| 6890 | nickel-binding protein HpnL | |||
| 6895 | S | S.HpyPU001ORF7430P (66% identity) | S.HpyPU001ORF6895P | |
| 6900 | formyltetrahydrofolate deformylase | |||
| 7415 | cag pathogenicity island protein | |||
| 7420 | S | S.HpyPU001ORF6895P (63% identity) | S.HpyPU001ORF7430P | |
| 7425 | CAAX protease | |||
| 7430 | M | M.HpyPU008ORF7520P (98% identity) | M.HpyPU001ORF7430P | |
| 7435 | R | HpyC027XVIIIP (94% identity) | HpyPU001ORF7430P | |
| 7440 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpyPU008VI (99% identity) | CCTC | M1.HpyPU001IV |
| 255 | M | M2.HpySH014VP (98% identity) | CCTC | M2.HpyPU001IVP |
| 260 | R | HpyPU007VIP (99% identity) | CCTC | HpyPU001IVP |
| 265 | sodium/proline symporter PutP | |||
| 455 | ACP S-malonyltransferase | |||
| 465 | R | Hpy225ORF101P (70% identity) | GATC | HpyPU001VIIP |
| 470 | M | M.HpySH011VIII (98% identity) | GATC | M.HpyPU001VII |
| 475 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 865 | elongation factor P | |||
| ??? | M | M.HpyPU004ORF890P (99% identity) | M.HpyPU001ORF870P | |
| 875 | R | R1.HpyC61ORFGP (95% identity) | R1.HpyPU001ORF870P | |
| 880 | R | R2.HpyPE102ORF865P (98% identity) | R2.HpyPU001ORF870P | |
| 885 | pseudaminic acid synthase | |||
| 1280 | exodeoxyribonuclease VII large subunit | |||
| 1285 | R | HpyPE116ORF1275P (97% identity) | CCGG | HpyPU001XIP |
| 1290 | M | M.HpyC105IV (100% identity) | CCGG | M.HpyPU001XI |
| 1295 | AAA domain-containing protein | |||
| 1720 | elongation factor 4 | |||
| 1725 | M | M.Hpyfe114ORF5325P (99% identity) | M.HpyPU001ORF1725P | |
| 1730 | 133 aa hypothetical protein | |||
| 2675 | ATP-dependent helicase | |||
| ??? | M | M.HpyC018XII (98% identity) | GTNNAC | M.HpyPU001VIII |
| 2685 | flagellar hook protein FlgE | |||
| 2940 | phosphatase PAP2 family protein | |||
| 2945 | R | HpyPE19ORF2445P (99% identity) | HpyPU001ORF2950P | |
| 2950 | M | M.HpysHP34ORF6260P (100% identity) | M.HpyPU001ORF2950P | |
| 2955 | type I restriction-modification system subunit | |||
| 3790 | outer membrane protein | |||
| 3795 | RM | Hpy6583ORF5870P (89% identity) | HpyPU001ORF3795P | |
| 3800 | (Fe-S)-binding protein | |||
| 4670 | catalase | |||
| 4675 | M | M.HpyCA8ORF2270P (95% identity) | M.HpyPU001ORF4675P | |
| 4680 | GIY-YIG nuclease family protein | |||
| 4675 | DNA cytosine methyltransferase | |||
| 4680 | R | HpyPE110IIP (100% identity) | ACNGT | HpyPU001IIP |
| 4685 | M | M.HpyPU004II (99% identity) | ACNGT | M.HpyPU001II |
| 4690 | translational GTPase TypA | |||
| 4695 | glycosyltransferase family 9 protein | |||
| 4700 | M | M.HpyPE111II (98% identity) | ATTAAT | M.HpyPU001III |
| 4705 | Hop family outer membrane protein HopJ/HopK | |||
| 4840 | OriC activity response regulator | |||
| 4845 | C | C2.HpyU005IVP (94% identity) | C.HpyPU001ORF4855P | |
| ??? | R | HpyH009ORF2085P (94% identity) | HpyPU001ORF4855P | |
| 4855 | M | M2.HpyH009ORF2085P (98% identity) | M1.HpyPU001ORF4855P | |
| 4860 | M | M1.HpyH009ORF2085P (99% identity) | M2.HpyPU001ORF4855P | |
| 4865 | IS1595 family transposase | |||
| 5230 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5235 | M | M.HpyPU004XII (99% identity) | TCNNGA | M.HpyPU001IX |
| 5240 | R | Hpy135ORF5545P (98% identity) | TCNNGA | HpyPU001IXP |
| 5245 | Laminin subunit alpha-2 precursor | |||
| 5420 | 144 aa hypothetical protein | |||
| ??? | M | M.Hpy1768ORFVP (98% identity) | GCGC | M.HpyPU001ORF5425P |
| 5430 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5875 | HAD family hydrolase | |||
| 5880 | M | M.HpyPU006I (98% identity) | CATG | M.HpyPU001I |
| 5885 | IceA2 protein | |||
| 6585 | DNA methyltransferase | |||
| 6590 | R | Hpy169ORF6715P (92% identity) | GANTC | HpyPU001VIP |
| 6595 | M | M.HpySORF7000P (100% identity) | GANTC | M.HpyPU001VI |
| 6600 | N-6 DNA methylase | |||
| 6595 | site-specific DNA-methyltransferase | |||
| 6600 | RM | Hpy5033ORF1695P (86% identity) | HpyPU001ORF6600P | |
| 6605 | carboxylating nicotinate-nucleotide | |||
| 6655 | copper response regulator transcription factor | |||
| 6660 | R | HpyCHN1VP (98% identity) | GAAGA | HpyPU001VP |
| 6665 | M | M2.HpyCH114XV (98% identity) | GAAGA | M1.HpyPU001V |
| 6670 | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.HpyPU001V |
| 6675 | site-specific DNA-methyltransferase | |||
| 6675 | site-specific DNA-methyltransferase | |||
| 6680 | R | HpySH011ORF6595P (99% identity) | HpyPU001ORF6685P | |
| 6685 | M | M.HpyPE111X (100% identity) | M.HpyPU001ORF6685P | |
| 6690 | site-specific DNA-methyltransferase | |||
| 7045 | cytochrome-c peroxidase | |||
| 7050 | R | HpyPE104ORF7220P (99% identity) | HpyPU001ORF7055P | |
| 7055 | M | M1.HpyPE121ORF7010P (100% identity) | M1.HpyPU001ORF7055P | |
| 7060 | M | M.HpySP706ORF6765P (99% identity) | M2.HpyPU001ORF7055P | |
| 7065 | addiction module antidote protein | |||
| 7110 | DNA polymerase I | |||
| 7115 | S | S2.Hpy3401ORF620P (98% identity) | S2.HpyPU001ORF7125P | |
| 7120 | S | S1.HpyPE140ORF7075P (98% identity) | S1.HpyPU001ORF7125P | |
| 7125 | RM | Hpy225ORF1543P (99% identity) | HpyPU001ORF7125P | |
| 7130 | ComF family protein | |||
| 7335 | transcription termination/antitermination | |||
| 7340 | RM | HpyC124ORF7440P (80% identity) | HpyPU001ORF7340P | |
| 7345 | DEAD/DEAH box helicase family protein | |||
| 7515 | 67 aa hypothetical protein | |||
| 7520 | M | M.HpyNCI25II (98% identity) | TGCA | M.HpyPU001X |
| 7525 | R | Hpy464ORF7490P (100% identity) | TGCA | HpyPU001XP |
| 7530 | 162 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6670 | site-specific DNA-methyltransferase | |||
| 6675 | M | M.HpyPU007ORF6545P (98% identity) | M.HpyPU001ORF6675P | |
| 6680 | restriction endonuclease | |||
| 6685 | Dam family site-specific | |||
| 6690 | M | M.HpyF234ORFBP (97% identity) | M.HpyPU001ORF6690P | |
| 6695 | R | HpyK027XVP (91% identity) | HpyPU001ORF6690P | |
| 6700 | rod shape-determining protein MreC | |||
| 6745 | DNA/RNA non-specific endonuclease | |||
| 6750 | M | M.HpyPU006ORF6810P (95% identity) | M.HpyPU001ORF6750P | |
| 6755 | R | HpyPU008ORF6860P (97% identity) | HpyPU001ORF6750P | |
| 6760 | biotin synthase | |||
| 7340 | class I SAM-dependent DNA methyltransferase | |||
| 7345 | R | HpyPU002ORF7075P (97% identity) | HpyPU001ORF7350P | |
| ??? | M | M.Hpy112ORF7680P (97% identity) | M.HpyPU001ORF7350P | |
| 7360 | ATP-dependent DNA helicase RecG | |||