Helicobacter pylori PUNO-002 |
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Putative Helicobacter pylori PUNO-002 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,567,616 bp
GenBank #: CP051501
REBASE acronym: HpyPU002
Org_num: 48223
All begin HG566_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2140 | RNA degradosome polyphosphate kinase | |||
| 2150 | S | S.HpySG12ORF2260P (99% identity) | CCANNNNNNTC | S.HpyPU002III |
| 2155 | M | M.HpyAs009V (98% identity) | CCANNNNNNTC | M.HpyPU002III |
| ??? | R | HpySORF2270P (95% identity) | CCANNNNNNTC | HpyPU002IIIP |
| 2170 | motility associated factor glycosyltransferase | |||
| 3720 | outer membrane beta-barrel protein HofF | |||
| 3725 | S | S.HpyK013ORF2950P (68% identity) | ACANNNNNNCTT | S.HpyPU002XI |
| 3730 | cadmium-translocating P-type ATPase | |||
| 4015 | N-acetylneuraminate synthase | |||
| 4020 | R | HpyPU004XVP (97% identity) | CAANNNNNNNCTC | HpyPU002ORF4030P |
| 4025 | S | S.HpySP706ORF2735P (68% identity) | CAANNNNNNNCTC | S.HpyPU002ORF4030P |
| 4030 | M | M.HpySH007ORF2590P (96% identity) | CAANNNNNNNCTC | M.HpyPU002ORF4030P |
| 4035 | DNA cytosine methyltransferase | |||
| 6615 | nickel-binding protein HpnL | |||
| 6620 | S | S.HpyPU002ORF7150P (99% identity) | S.HpyPU002ORF6620P | |
| 6625 | formyltetrahydrofolate deformylase | |||
| 7145 | 59 aa hypothetical protein | |||
| 7150 | S | S.HpyPU002ORF6620P (99% identity) | S.HpyPU002ORF7150P | |
| 7155 | CAAX protease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyPE138IV (98% identity) | CCTC | M1.HpyPU002VI |
| 250 | M | M2.HpySH014VP (98% identity) | CCTC | M2.HpyPU002VIP |
| 255 | R | HpyPU001IVP (96% identity) | CCTC | HpyPU002VIP |
| 260 | sodium/proline symporter PutP | |||
| 435 | ACP S-malonyltransferase | |||
| 445 | R | HpyAs010VIP (96% identity) | GATC | HpyPU002VIIP |
| 450 | M | M.Hpy1681ORFTP (98% identity) | GATC | M.HpyPU002VII |
| 455 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1270 | exodeoxyribonuclease VII large subunit | |||
| 1275 | R | HpyCHN8IVP (95% identity) | CCGG | HpyPU002VP |
| 1280 | M | M.HpySH014ORF1415P (99% identity) | CCGG | M.HpyPU002V |
| 1285 | AAA domain-containing protein | |||
| 1710 | elongation factor 4 | |||
| 1715 | M | M.Hpyoh1ORF4535P (99% identity) | M.HpyPU002ORF1715P | |
| 1720 | 133 aa hypothetical protein | |||
| 1885 | Sec-independent protein translocase subunit | |||
| 1895 | M | M.HpyPU006ORF1930P (99% identity) | M.HpyPU002ORF1895P | |
| 1900 | Holliday junction branch migration DNA helicase | |||
| 2230 | Hop family outer membrane protein HopJ/HopK | |||
| 2235 | M | M.HpyPE121II (98% identity) | ATTAAT | M.HpyPU002ORF2235P |
| 2240 | glycosyltransferase family 9 protein | |||
| 2245 | translational GTPase TypA | |||
| 2250 | M | M.HpyLIM7II (100% identity) | ACNGT | M.HpyPU002II |
| 2255 | R | HpyPU001IIP (99% identity) | ACNGT | HpyPU002IIP |
| 2260 | DNA cytosine methyltransferase | |||
| 2255 | GIY-YIG nuclease family protein | |||
| 2260 | M | M.HpyC101ORF2445P (98% identity) | ACGT | M.HpyPU002ORF2260P |
| 2265 | R | HpyPE138ORF2260P (96% identity) | ACGT | HpyPU002ORF2260P |
| 2270 | catalase | |||
| 3420 | 105 aa hypothetical protein | |||
| 3425 | R | HpySP706ORF3020P (99% identity) | HpyPU002ORF3430P | |
| 3430 | M | M2.HpySP706ORF3020P (100% identity) | M1.HpyPU002ORF3430P | |
| 3435 | M | M1.HpySP706ORF3020P (98% identity) | M2.HpyPU002ORF3430P | |
| 3440 | 30S ribosomal protein S12 methylthiotransferase | |||
| 4030 | type I restriction-modification system subunit | |||
| 4035 | M | M.HpysHP34ORF6260P (100% identity) | M.HpyPU002ORF4035P | |
| 4040 | R | HpyPE19ORF2445P (98% identity) | HpyPU002ORF4035P | |
| 4045 | phosphatase PAP2 family protein | |||
| 4305 | flagellar hook protein FlgE | |||
| ??? | M | M.HpySORF4790P (99% identity) | GTNNAC | M.HpyPU002VIII |
| 4315 | ATP-dependent helicase | |||
| 4980 | methyltransferase | |||
| 4985 | M | M.HpyPU006XII (99% identity) | TCNNGA | M.HpyPU002IX |
| 4990 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | HpyPU002IXP |
| 4995 | Laminin subunit alpha-2 precursor | |||
| 5170 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyPE121XII (97% identity) | GCGC | M.HpyPU002ORF5175P |
| 5180 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5625 | HAD family hydrolase | |||
| 5630 | M | M.Hpy225ORF1242P (99% identity) | CATG | M.HpyPU002I |
| ??? | R | Hpy55ORF1219P (70% identity) | CATG | HpyPU002IP |
| 5640 | serine O-acetyltransferase | |||
| 6335 | DNA methyltransferase | |||
| ??? | R | HpyUM023ORF560P (97% identity) | HpyPU002ORF6355P | |
| 6350 | 56 aa hypothetical protein | |||
| 6355 | M | M.Hpyfe74ORF6975P (40% identity) | M.HpyPU002ORF6355P | |
| 6360 | N-6 DNA methylase | |||
| 6355 | site-specific DNA-methyltransferase | |||
| 6360 | RM | HpyPE121ORF6550P (87% identity) | HpyPU002ORF6360P | |
| 6365 | carboxylating nicotinate-nucleotide | |||
| 6815 | DNA polymerase I | |||
| 6820 | S | S.HpyAL4ORF6935P (64% identity) | S.HpyPU002ORF6825P | |
| 6825 | RM | HpyPE105ORF7120P (97% identity) | HpyPU002ORF6825P | |
| 6830 | ComF family protein | |||
| 6955 | YjgP/YjgQ family permease | |||
| ??? | M | M1.Hpy180ORF7645P (77% identity) | CCATC | M1.HpyPU002IV |
| 6965 | M | M2.HpyPU004IV (100% identity) | CCATC | M2.HpyPU002IV |
| 6970 | R | HpyPE138IIIP (98% identity) | CCATC | HpyPU002IVP |
| 6975 | outer membrane protein | |||
| 7060 | 175 aa hypothetical protein | |||
| 7065 | RM | HpyK032ORF670P (90% identity) | HpyPU002ORF7065P | |
| 7070 | DEAD/DEAH box helicase family protein | |||
| 7250 | 67 aa hypothetical protein | |||
| 7255 | M | M.HpyPU006XIII (99% identity) | TGCA | M.HpyPU002X |
| 7260 | R | Hpyfe7ORF7395P (99% identity) | TGCA | HpyPU002XP |
| 7265 | DNA cytosine methyltransferase | |||
| 7260 | type II restriction endonuclease | |||
| 7265 | M | M.Hpy120ORF7775P (99% identity) | M.HpyPU002ORF7265P | |
| 7270 | DUF5343 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6415 | copper response regulator transcription factor | |||
| 6420 | M | M.Hpy20ORF6995P (44% identity) | M.HpyPU002ORF6420P | |
| 6425 | site-specific DNA-methyltransferase | |||
| 6430 | R | HpyLIM7ORFXP (96% identity) | HpyPU002ORF6420P | |
| 6435 | rod shape-determining protein MreC | |||
| 6480 | DNA/RNA non-specific endonuclease | |||
| 6485 | M | M.Hpy20ORF7065P (96% identity) | M.HpyPU002ORF6485P | |
| 6490 | R | HpySP706ORF6460P (91% identity) | HpyPU002ORF6485P | |
| 6495 | biotin synthase | |||
| 7065 | class I SAM-dependent DNA methyltransferase | |||
| 7070 | R | HpyPE119ORF7325P (97% identity) | HpyPU002ORF7075P | |
| ??? | M | M.Hpy39ORFMP (96% identity) | M.HpyPU002ORF7075P | |
| 7090 | ATP-dependent DNA helicase RecG | |||