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Putative Helicobacter pylori PUNO-007 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,628,378 bp
GenBank #: CP051497
REBASE acronym: HpyPU007
Org_num: 48227
All begin HG570_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2115 | RNA degradosome polyphosphate kinase | |||
??? | S | S.HpyPO02ORF4325P (97% identity) | CACNNNNNTC | S.HpyPU007XVII |
2130 | M | M.HpyPU001ORF4775P (96% identity) | CACNNNNNTC | M.HpyPU007XVII |
2135 | R | HpyJSHR3ORF6130P (92% identity) | CACNNNNNTC | HpyPU007XVIIP |
2140 | motility associated factor glycosyltransferase | |||
3690 | outer membrane beta-barrel protein HofF | |||
3695 | S | S.HpyKG4XIX (94% identity) | AAGNNNNNNTAG | S.HpyPU007XVI |
3700 | cadmium-translocating P-type ATPase | |||
3970 | hydroxyethylthiazole kinase | |||
3975 | R | HpyCA20VP (95% identity) | AAGNNNNNCTT | HpyPU007XVP |
3980 | S | S.HpyJO10ORF1805P (94% identity) | AAGNNNNNCTT | S.HpyPU007XV |
3985 | M | M.HpyPU001ORF2955P (96% identity) | AAGNNNNNCTT | M.HpyPU007XV |
3990 | phosphatase PAP2 family protein | |||
6785 | nickel-binding protein HpnL | |||
6790 | S | S.Hpy117ORF6850P (71% identity) | GANNNNNNNTRRG | S.HpyPU007XVIII |
6795 | formyltetrahydrofolate deformylase | |||
7285 | cag pathogenicity island protein | |||
7290 | S | S.Hpyfe21ORF410P (65% identity) | CAANNNNNNNTAYC | S.HpyPU007XIV |
7295 | CAAX protease | |||
7300 | M | M.HpyPU008ORF7520P (98% identity) | CAANNNNNNNTAYC | M.HpyPU007XIV |
7305 | R | HpySH007ORF7295P (97% identity) | CAANNNNNNNTAYC | HpyPU007XIVP |
7310 | M48 family metallopeptidase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
240 | AguA family protein | |||
245 | M | M.HpyP98ORFCP (98% identity) | CCTC | M1.HpyPU007VI |
250 | M | M2.HpyCA7IVP (99% identity) | CCTC | M2.HpyPU007VIP |
255 | R | HpyPU001IVP (99% identity) | CCTC | HpyPU007VIP |
260 | sodium/proline symporter PutP | |||
445 | 337 aa hypothetical protein | |||
450 | M | M.HpyC113VI (97% identity) | GATC | M.HpyPU007IX |
455 | alpha-(1,2)-fucosyltransferase FutC1 | |||
1245 | exodeoxyribonuclease VII large subunit | |||
??? | M | M.Hpy135ORF1345P (99% identity) | TCGA | M.HpyPU007XII |
1255 | 204 aa hypothetical protein | |||
1255 | 204 aa hypothetical protein | |||
1260 | R | HpyPE11IIP (98% identity) | CCGG | HpyPU007VP |
1265 | M | M.HpyPU004V (100% identity) | CCGG | M.HpyPU007V |
1270 | AAA domain-containing protein | |||
1500 | polysaccharide deacetylase | |||
1505 | R | Hpy120ORF1585P (98% identity) | CTNAG | HpyPU007VIIP |
1510 | M | M.HpyPU006VI (99% identity) | CTNAG | M.HpyPU007VII |
1515 | 119 aa hypothetical protein | |||
2200 | Hop family outer membrane protein HopJ/HopK | |||
2205 | M | M.HpyJ029IX (98% identity) | ATTAAT | M.HpyPU007III |
2210 | glycosyltransferase family 9 protein | |||
2215 | translational GTPase TypA | |||
2220 | M | M.Hpy135ORF2355P (99% identity) | ACNGT | M.HpyPU007II |
2225 | R | HpyPE121ORF2240P (99% identity) | ACNGT | HpyPU007IIP |
2230 | DNA cytosine methyltransferase | |||
2225 | GIY-YIG nuclease family protein | |||
2230 | M | M.HpySH007ORF2410P (99% identity) | ACGT | M.HpyPU007ORF2230P |
2235 | R | HpyUM065ORF7975P (99% identity) | ACGT | HpyPU007ORF2230P |
2240 | catalase | |||
2325 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2330 | M | M.HpyME28II (99% identity) | GTAC | M.HpyPU007X |
2335 | R | HpyAL02ORFNP (71% identity) | GTAC | HpyPU007XP |
2340 | M23 family metallopeptidase | |||
3125 | (Fe-S)-binding protein | |||
3130 | RM | Hpyfe83ORF3805P (86% identity) | HpyPU007ORF3130P | |
3135 | 450 aa hypothetical protein | |||
3395 | 101 aa hypothetical protein | |||
3400 | R | HpyPE11ORF3015P (99% identity) | HpyPU007ORF3405P | |
3405 | M | M1.HpyCOL210ORF3530P (99% identity) | M1.HpyPU007ORF3405P | |
3410 | M | M1.HpySP706ORF3020P (80% identity) | M2.HpyPU007ORF3405P | |
3415 | 30S ribosomal protein S12 methylthiotransferase | |||
4240 | flagellar hook protein FlgE | |||
??? | M | M.HpyPU008XI (99% identity) | GTNNAC | M.HpyPU007XI |
4250 | ATP-dependent helicase | |||
4960 | acetyl-CoA carboxylase biotin carboxylase | |||
4965 | M | M.HpyGCT55ORFEP (99% identity) | TCNNGA | M.HpyPU007XIII |
4970 | R | HpySP210IXP (99% identity) | TCNNGA | HpyPU007XIIIP |
4975 | Laminin subunit alpha-2 precursor | |||
5145 | 144 aa hypothetical protein | |||
??? | M | M.HpyLIM2ORF5505P (98% identity) | GCGC | M.HpyPU007ORF5150P |
5155 | flagellar biosynthesis anti-sigma factor FlgM | |||
5750 | HAD family hydrolase | |||
5755 | M | M.HpyC004I (98% identity) | CATG | M.HpyPU007I |
5760 | IceA2 protein | |||
6455 | 92 aa hypothetical protein | |||
6460 | R | HpyAs005IXP (97% identity) | GANTC | HpyPU007VIIIP |
6465 | M | M.HpyAR9IV (99% identity) | GANTC | M.HpyPU007VIII |
6470 | N-6 DNA methylase | |||
6465 | site-specific DNA-methyltransferase | |||
6470 | RM | Hpy169ORF6730P (90% identity) | HpyPU007ORF6470P | |
6475 | carboxylating nicotinate-nucleotide | |||
6530 | site-specific DNA-methyltransferase | |||
6535 | R | HpyPU001ORF6685P (99% identity) | HpyPU007ORF6540P | |
6540 | M | M.HpyPU001ORF6685P (99% identity) | M.HpyPU007ORF6540P | |
6545 | site-specific DNA-methyltransferase | |||
6630 | type II toxin-antitoxin system YafQ family | |||
6635 | R | HpyPE11XIIP (68% identity) | CCTTC | HpyPU007ORF6645P |
6640 | 97 aa hypothetical protein | |||
6645 | M | M.HpyPU004ORF6620P (99% identity) | CCTTC | M.HpyPU007ORF6645P |
6650 | biotin synthase | |||
6710 | glycosyltransferase family 8 protein | |||
6715 | R | HpyF234ORFSP (98% identity) | HpyPU007ORF6715P | |
6720 | DNA (cytosine-5-)-methyltransferase | |||
6715 | ThaI family type II restriction endonuclease | |||
6720 | M | M.HpyAs009ORF6800P (99% identity) | M.HpyPU007ORF6720P | |
6725 | UDP-N-acetylmuramate dehydrogenase | |||
6985 | DNA polymerase I | |||
6990 | S | S1.Hpy340ORF1225P (63% identity) | CYANNNNNNTGY | S.HpyPU007XIX |
6995 | RM | HpyBR17ORF7060P (98% identity) | CYANNNNNNTGY | HpyPU007XIX |
7000 | ComF family protein | |||
7125 | YjgP/YjgQ family permease | |||
??? | M | M1.HpyPE138III (77% identity) | CCATC | M1.HpyPU007IV |
7135 | M | M2.Hpy120ORF7345P (99% identity) | CCATC | M2.HpyPU007IV |
7140 | R | Hpyfe75ORF215P (98% identity) | CCATC | HpyPU007IVP |
7145 | outer membrane protein | |||
7210 | transcription termination/antitermination | |||
7215 | RM | HpyPE138XII (66% identity) | HpyPU007ORF7215P | |
7220 | DEAD/DEAH box helicase family protein | |||
7390 | type II methylase | |||
7395 | R | HpyPE121XIP (83% identity) | HpyPU007ORF7395P | |
7400 | 166 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6525 | copper response regulator transcription factor | |||
6530 | M | M.HpyPU001ORF6675P (98% identity) | M.HpyPU007ORF6545P | |
6535 | restriction endonuclease | |||
6540 | Dam family site-specific | |||
6545 | site-specific DNA-methyltransferase | |||
6550 | R | Hpy20ORF6995P (98% identity) | HpyPU007ORF6545P | |
6555 | rod shape-determining protein MreC | |||
6605 | DNA/RNA non-specific endonuclease | |||
6610 | M | M.HpyOK36ORFLP (96% identity) | M.HpyPU007ORF6610P | |
6615 | R | HpySP706ORF6460P (92% identity) | HpyPU007ORF6610P | |
6620 | replication initiation protein | |||
7215 | class I SAM-dependent DNA methyltransferase | |||
7220 | R | HpySH011ORF7260P (98% identity) | HpyPU007ORF7225P | |
7225 | M | M.HpyNCI32ORFGP (97% identity) | M.HpyPU007ORF7225P | |
7230 | ATP-dependent DNA helicase RecG |