Helicobacter pylori PUNO-009 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori PUNO-009 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,629,514 bp
GenBank #: CP051495
REBASE acronym: HpyPU009
Org_num: 48229
All begin HG572_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2065 | RNA degradosome polyphosphate kinase | |||
| 2075 | S | S.HpyPU003ORF2075P (100% identity) | CACNNNNNTTA | S.HpyPU009ORF2080P |
| 2080 | M | M.HpyPU003ORF2075P (99% identity) | CACNNNNNTTA | M.HpyPU009ORF2080P |
| 2085 | R | HpyG008ORF2150P (88% identity) | CACNNNNNTTA | HpyPU009ORF2080P |
| 2090 | motility associated factor glycosyltransferase | |||
| 3700 | outer membrane beta-barrel protein HofF | |||
| 3705 | S | S.HpyPU003VI (99% identity) | CRTANNNNNNNTC | S.HpyPU009VI |
| 3710 | cadmium-translocating P-type ATPase | |||
| 6780 | nickel-binding protein HpnL | |||
| 6785 | S | S.HpyPU003ORF7320P (99% identity) | S.HpyPU009ORF6785P | |
| 6790 | formyltetrahydrofolate deformylase | |||
| 7305 | 303 aa hypothetical protein | |||
| 7310 | S | S.HpyNCI57XII (95% identity) | CAANNNNNNNTAYG | S.HpyPU009XIV |
| 7315 | M | M.HpyC210XIV (95% identity) | CAANNNNNNNTAYG | M.HpyPU009XIV |
| 7320 | R | HpySWT02ORF7140P (93% identity) | CAANNNNNNNTAYG | HpyPU009XIVP |
| 7325 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpyPU003V (100% identity) | CCTC | M1.HpyPU009V |
| 255 | M | M2.HpyPU003VP (100% identity) | CCTC | M2.HpyPU009VP |
| 260 | sodium/proline symporter PutP | |||
| 440 | 329 aa hypothetical protein | |||
| 445 | M | M.HpyPU003VIII (100% identity) | GATC | M.HpyPU009VIII |
| 450 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 500 | HNH endonuclease | |||
| 505 | M | M.HpyPU003ORF500P (99% identity) | M.HpyPU009ORF505P | |
| 510 | bifunctional metallophosphatase/5-nucleotidase | |||
| 1230 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyPU003XI (100% identity) | TCGA | M.HpyPU009XI |
| 1240 | 86 aa hypothetical protein | |||
| 1240 | 86 aa hypothetical protein | |||
| 1245 | R | HpyPU003IVP (100% identity) | CCGG | HpyPU009IVP |
| 1250 | M | M.HpyPU003IV (100% identity) | CCGG | M.HpyPU009IV |
| 1255 | AAA domain-containing protein | |||
| 2150 | Hop family outer membrane protein HopJ/HopK | |||
| 2155 | M | M.HpyPU003II (99% identity) | ATTAAT | M.HpyPU009II |
| 2160 | glycosyltransferase family 9 protein | |||
| 2165 | translational GTPase TypA | |||
| 2170 | M | M.HpyPU002ORF2260P (98% identity) | ACGT | M.HpyPU009ORF2170P |
| 2175 | R | HpyPU003ORF2165P (100% identity) | ACGT | HpyPU009ORF2170P |
| 2180 | catalase | |||
| 2260 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2265 | M | M.HpyPU003IX (100% identity) | GTAC | M.HpyPU009IX |
| 2270 | R | HpyPU003IXP (100% identity) | GTAC | HpyPU009IXP |
| 2275 | M23 family metallopeptidase | |||
| 2930 | (Fe-S)-binding protein | |||
| 2935 | RM | Hpy397ORF5610P (91% identity) | HpyPU009ORF2935P | |
| 2940 | 448 aa hypothetical protein | |||
| 4385 | flagellar hook protein FlgE | |||
| ??? | R | HpyLIM9IXP (96% identity) | GTNNAC | HpyPU009XP |
| ??? | M | M.HpyPU001VIII (99% identity) | GTNNAC | M.HpyPU009X |
| 4400 | ATP-dependent helicase | |||
| 5085 | methyltransferase | |||
| 5090 | M | M.HpyPU003XII (100% identity) | TCNNGA | M.HpyPU009XII |
| 5095 | R | HpyPU003XIIP (100% identity) | TCNNGA | HpyPU009XIIP |
| 5100 | Laminin subunit alpha-2 precursor | |||
| 5285 | 144 aa hypothetical protein | |||
| 5290 | R | Hpyoh1ORF495P (100% identity) | GCGC | HpyPU009ORF5295P |
| ??? | M | M.HpyPU003ORF5300P (100% identity) | GCGC | M.HpyPU009ORF5295P |
| 5300 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5745 | HAD family hydrolase | |||
| 5750 | M | M.HpyPU003I (99% identity) | CATG | M.HpyPU009I |
| ??? | R | HpyLIM8IP (100% identity) | CATG | HpyPU009IP |
| 5760 | serine O-acetyltransferase | |||
| 6475 | S41 family peptidase | |||
| ??? | R | HpyPU003ORF6495P (99% identity) | GANTC | HpyPU009ORF6490P |
| 6490 | M | M.HpyPU003ORF6495P (100% identity) | GANTC | M.HpyPU009ORF6490P |
| 6495 | N-6 DNA methylase | |||
| 6490 | site-specific DNA-methyltransferase | |||
| 6495 | RM | HpyPU003ORF6500P (99% identity) | HpyPU009ORF6495P | |
| 6500 | carboxylating nicotinate-nucleotide | |||
| 6550 | copper response regulator transcription factor | |||
| 6555 | R | HpyPU003VIIP (100% identity) | GAAGA | HpyPU009VIIP |
| 6560 | M | M1.HpyPU003VII (100% identity) | GAAGA | M1.HpyPU009VII |
| 6565 | M | M.HpyU402V (99% identity) | GAAGA | M2.HpyPU009VII |
| 6570 | site-specific DNA-methyltransferase | |||
| 6975 | DEAD/DEAH box helicase family protein | |||
| 6980 | RM | HpyJ017ORF7380P (88% identity) | HpyPU009ORF6980P | |
| 6985 | 176 aa hypothetical protein | |||
| 7065 | outer membrane protein | |||
| 7070 | R | HpyPU003IIIP (100% identity) | CCATC | HpyPU009IIIP |
| 7075 | M | M1.HpyPU003III (100% identity) | CCATC | M1.HpyPU009III |
| ??? | M | M2.HpyPU003III (100% identity) | CCATC | M2.HpyPU009III |
| 7085 | YjgP/YjgQ family permease | |||
| 7210 | ComF family protein | |||
| 7215 | RM | HpyPU003ORF7220P (99% identity) | HpyPU009ORF7215P | |
| 7220 | S | S.HpyCRI2XIV (68% identity) | S.HpyPU009ORF7215P | |
| 7225 | DNA polymerase I | |||
| 7400 | 67 aa hypothetical protein | |||
| 7405 | M | M.HpyPU003XIII (100% identity) | TGCA | M.HpyPU009XIII |
| 7410 | R | HpyPU003XIIIP (100% identity) | TGCA | HpyPU009XIIIP |
| 7415 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6565 | site-specific DNA-methyltransferase | |||
| 6570 | M | M.HpyKG3ORF390P (93% identity) | M.HpyPU009ORF6570P | |
| 6575 | R | HpyPU003ORF6580P (99% identity) | HpyPU009ORF6570P | |
| 6580 | rod shape-determining protein MreC | |||
| 6625 | DNA/RNA non-specific endonuclease | |||
| 6630 | M | M.HpyPU003ORF6640P (98% identity) | M.HpyPU009ORF6630P | |
| 6635 | R | HpyPU003ORF6640P (95% identity) | HpyPU009ORF6630P | |
| 6640 | biotin synthase | |||
| 6965 | ATP-dependent DNA helicase RecG | |||
| 6970 | M | M.HpySP06ORF7290P (97% identity) | M.HpyPU009ORF6970P | |
| 6975 | R | HpyPU003ORF6975P (99% identity) | HpyPU009ORF6970P | |
| 6980 | class I SAM-dependent DNA methyltransferase | |||