Helicobacter pylori PUNO-010 |
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Putative Helicobacter pylori PUNO-010 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,691,877 bp
GenBank #: CP051494
REBASE acronym: HpyPU010
Org_num: 48230
All begin HG573_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2250 | RNA degradosome polyphosphate kinase | |||
| 2260 | S | S.HpyPE14ORF2175P (99% identity) | S.HpyPU010ORF2265P | |
| 2265 | M | M.HpyPU002III (96% identity) | M.HpyPU010ORF2265P | |
| 2270 | R | HpyHP89VP (89% identity) | HpyPU010ORF2265P | |
| 2275 | motility associated factor glycosyltransferase | |||
| 3850 | outer membrane beta-barrel protein HofF | |||
| 3855 | S | S.HpyAL5XI (95% identity) | TAAANNNNNTTTA | S.HpyPU010XV |
| 3860 | CAAX protease | |||
| 4155 | hydroxyethylthiazole kinase | |||
| 4160 | R | HpyAs010ORF2390P (96% identity) | CTANNNNNNNTTC | HpyPU010VIIP |
| 4165 | S | S.Hpy66XVI (95% identity) | CTANNNNNNNTTC | S.HpyPU010VII |
| 4170 | M | M.HpyPU008XV (96% identity) | CTANNNNNNNTTC | M.HpyPU010VII |
| 4175 | phosphatase PAP2 family protein | |||
| 6915 | M48 family metallopeptidase | |||
| 6920 | R | Hpy5005ORF4735P (94% identity) | TCTANNNNNNCTT | HpyPU010XVIP |
| 6925 | M | M.HpyC204ORF7760P (95% identity) | TCTANNNNNNCTT | M.HpyPU010XVI |
| 6930 | S | S.HpyIR9ORF6780P (98% identity) | TCTANNNNNNCTT | S.HpyPU010XVI |
| 6935 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpyAL02ORFBP (97% identity) | CCTC | M1.HpyPU010V |
| 255 | M | M2.HpyBR23IVP (99% identity) | CCTC | M2.HpyPU010VP |
| 260 | iron permease | |||
| 255 | DNA cytosine methyltransferase | |||
| ??? | R | HpyNCI16ORFPP (98% identity) | HpyPU010ORF270P | |
| ??? | M | M.HpyBR20IV (98% identity) | M.HpyPU010ORF270P | |
| 275 | sodium/proline symporter PutP | |||
| 450 | ACP S-malonyltransferase | |||
| 460 | R | HpyPU004IXP (95% identity) | GATC | HpyPU010IXP |
| 465 | M | M.HpyCOL210X (95% identity) | GATC | M.HpyPU010IX |
| 470 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1390 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyV001XI (98% identity) | TCGA | M.HpyPU010XIII |
| 1400 | 204 aa hypothetical protein | |||
| 1400 | 204 aa hypothetical protein | |||
| 1405 | R | HpyPU002VP (89% identity) | CCGG | HpyPU010IVP |
| 1410 | M | M.HpyP96ORFAP (99% identity) | CCGG | M.HpyPU010IV |
| 1415 | AAA domain-containing protein | |||
| 2335 | Hop family outer membrane protein HopJ/HopK | |||
| 2340 | M | M.HpyPU001III (98% identity) | ATTAAT | M.HpyPU010III |
| 2345 | glycosyltransferase family 9 protein | |||
| 2350 | translational GTPase TypA | |||
| 2355 | M | M.HpyH012II (99% identity) | ACNGT | M.HpyPU010II |
| 2360 | R | HpySP313IIP (99% identity) | ACNGT | HpyPU010IIP |
| 2365 | DNA cytosine methyltransferase | |||
| 2360 | GIY-YIG nuclease family protein | |||
| 2365 | M | M.HpyL032ORF2395P (96% identity) | ACGT | M.HpyPU010ORF2365P |
| ??? | R | HpyPO04ORF2300P (96% identity) | ACGT | HpyPU010ORF2365P |
| 2375 | catalase | |||
| 2460 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2465 | M | M.HpyME40IX (98% identity) | GTAC | M.HpyPU010XI |
| 2470 | R | HpyAL7VIIIP (98% identity) | GTAC | HpyPU010XIP |
| 2475 | M23 family metallopeptidase | |||
| 3270 | (Fe-S)-binding protein | |||
| 3275 | RM | HpyC023ORF4460P (87% identity) | HpyPU010ORF3275P | |
| 3280 | SIR2 family protein | |||
| 4000 | 145 aa hypothetical protein | |||
| 4005 | R | HpyBR20XVP (100% identity) | CGWCG | HpyPU010VIP |
| 4010 | M | M.HpyU432VI (100% identity) | CGWCG | M.HpyPU010VI |
| 4015 | ABC transporter permease subunit | |||
| 4440 | flagellar hook protein FlgE | |||
| 4445 | R | HpySP316ORF4795P (94% identity) | GTNNAC | HpyPU010XIIP |
| ??? | M | M.HpySORF4790P (99% identity) | GTNNAC | M.HpyPU010XII |
| 4455 | ATP-dependent helicase | |||
| 5190 | methyltransferase | |||
| 5195 | M | M.HpyLIM10XII (99% identity) | TCNNGA | M.HpyPU010XIV |
| 5200 | R | HpyGM7XIVP (99% identity) | TCNNGA | HpyPU010XIVP |
| 5205 | Laminin subunit alpha-2 precursor | |||
| 5390 | 144 aa hypothetical protein | |||
| 5395 | M | M.HpyGM8XII (99% identity) | GCGC | M.HpyPU010ORF5395P |
| 5400 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6035 | HAD family hydrolase | |||
| 6040 | M | M.HpyH019I (96% identity) | CATG | M.HpyPU010I |
| 6045 | IceA2 protein | |||
| 6755 | PDZ domain-containing protein | |||
| 6760 | R | HpyPO07VIP (95% identity) | GANTC | HpyPU010VIIIP |
| 6765 | M | M.Hpy94ORF6990P (98% identity) | GANTC | M.HpyPU010VIII |
| 6770 | N-6 DNA methylase | |||
| 6765 | site-specific DNA-methyltransferase | |||
| 6770 | RM | HpyPU008ORF6700P (91% identity) | HpyPU010ORF6770P | |
| 6775 | carboxylating nicotinate-nucleotide | |||
| 6825 | copper response regulator transcription factor | |||
| 6830 | R | HpyC010VIP (47% identity) | HpyPU010ORF6830P | |
| 6835 | 67 aa hypothetical protein | |||
| 6995 | DEAD/DEAH box helicase family protein | |||
| 7000 | RM | HpySP706ORF7060P (72% identity) | HpyPU010ORF7000P | |
| 7005 | CAAX protease | |||
| 7215 | ComF family protein | |||
| 7220 | R | HpyU303IXP (100% identity) | GGATG | HpyPU010XP |
| 7225 | M | M1.HpyU303IX (100% identity) | GGATG | M1.HpyPU010X |
| 7230 | M | M2.HpyU303IX (100% identity) | GGATG | M2.HpyPU010X |
| 7235 | C | C.HpyU409XP (100% identity) | C.HpyPU010XP | |
| 7240 | DNA polymerase I | |||
| 7645 | site-specific DNA-methyltransferase | |||
| 7650 | M | M.Hpy340ORF3340P (94% identity) | M.HpyPU010ORF7650P | |
| 7655 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6985 | ATP-dependent DNA helicase RecG | |||
| 6990 | M | M.Hpy444A6ORFCP (97% identity) | M.HpyPU010ORF6990P | |
| 6995 | R | HpySP16ORF7020P (95% identity) | HpyPU010ORF6990P | |
| 7000 | class I SAM-dependent DNA methyltransferase | |||
| 7570 | biotin synthase | |||
| 7575 | R | HpyME08ORF6725P (90% identity) | HpyPU010ORF7580P | |
| 7580 | M | M.HpyPU001ORF6750P (96% identity) | M.HpyPU010ORF7580P | |
| 7585 | DNA/RNA non-specific endonuclease | |||
| 7635 | rod shape-determining protein MreC | |||
| 7640 | R | HpyC018ORF7605P (92% identity) | HpyPU010ORF7645P | |
| 7645 | M | M.HpyG003ORF6725P (95% identity) | M.HpyPU010ORF7645P | |
| 7650 | DUF1887 family protein | |||