Helicobacter pylori LIM-006 |
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Putative Helicobacter pylori LIM-006 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,745,296 bp
GenBank #: CP051493
REBASE acronym: HpyLIM6
Org_num: 48208
All begin HG579_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2260 | RNA degradosome polyphosphate kinase | |||
| 2270 | S | S.HpyGT7ORF2210P (98% identity) | CCANNNNNNTTA | S.HpyLIM6ORF2275P |
| 2275 | M | M.HpyH023ORF2130P (96% identity) | CCANNNNNNTTA | M.HpyLIM6ORF2275P |
| 2280 | R | HpyBR17ORF2265P (92% identity) | CCANNNNNNTTA | HpyLIM6ORF2275P |
| 2285 | motility associated factor glycosyltransferase | |||
| 3920 | outer membrane beta-barrel protein HofF | |||
| 3925 | S | S.HpyIN1XIII (94% identity) | S.HpyLIM6ORF3925P | |
| 3930 | cadmium-translocating P-type ATPase | |||
| 4410 | hydroxyethylthiazole kinase | |||
| 4415 | R | HpyC027XVIP (93% identity) | CAANNNNNNNTTC | HpyLIM6ORF4425P |
| 4420 | S | S.HpyME07IX (96% identity) | CAANNNNNNNTTC | S.HpyLIM6ORF4425P |
| 4425 | M | M.HpyH015XIX (94% identity) | CAANNNNNNNTTC | M.HpyLIM6ORF4425P |
| 4430 | phosphatase PAP2 family protein | |||
| 7815 | FAD-dependent thymidylate synthase | |||
| 7820 | S | S.HpyH004ORF6685P (96% identity) | S.HpyLIM6ORF7825P | |
| 7825 | M | M.HpySP402ORF6895P (94% identity) | M.HpyLIM6ORF7825P | |
| 7830 | R | HpyU102VIP (94% identity) | HpyLIM6ORF7825P | |
| 7835 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpySP604V (98% identity) | CCTC | M1.HpyLIM6III |
| 255 | M | M2.HpyF019IXP (98% identity) | CCTC | M2.HpyLIM6IIIP |
| 260 | R | HpyC021VIIIP (91% identity) | CCTC | HpyLIM6IIIP |
| 265 | site-specific DNA-methyltransferase | |||
| 260 | HNH endonuclease | |||
| 265 | M | M.HpyU436IX (100% identity) | GTSAC | M.HpyLIM6IX |
| 270 | R | HpyLI29IVP (100% identity) | GTSAC | HpyLIM6IXP |
| 275 | sodium/proline symporter PutP | |||
| 460 | 328 aa hypothetical protein | |||
| 465 | M | M.HpyGT04VIII (97% identity) | GATC | M.HpyLIM6VI |
| 470 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1400 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyMT5118VII (98% identity) | TCGA | M.HpyLIM6XIII |
| 1410 | 198 aa hypothetical protein | |||
| 1405 | site-specific DNA-methyltransferase | |||
| ??? | R | HpyPE21ORF1500P (96% identity) | CCGG | HpyLIM6ORF1415P |
| 1415 | M | M.HpySWT06I (100% identity) | CCGG | M.HpyLIM6ORF1415P |
| 1420 | AAA domain-containing protein | |||
| 1835 | elongation factor 4 | |||
| 1840 | M | M.HpyUM037ORF3330P (99% identity) | M.HpyLIM6ORF1840P | |
| 1845 | 92 aa hypothetical protein | |||
| 2345 | Hop family outer membrane protein HopJ/HopK | |||
| 2350 | class I SAM-dependent methyltransferase | |||
| 2345 | Hop family outer membrane protein HopJ/HopK | |||
| 2350 | M | M.HpyKH13ORFVP (97% identity) | ATTAAT | M.HpyLIM6XI |
| 2355 | glycosyltransferase family 9 protein | |||
| 2360 | translational GTPase TypA | |||
| 2365 | M | M.HpyKH27ORFB1P (98% identity) | ACGT | M.HpyLIM6ORF2365P |
| 2370 | R | HpyCOL211ORF2280P (97% identity) | ACGT | HpyLIM6ORF2365P |
| 2375 | catalase | |||
| 2465 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2470 | M | M.HpyPE17XVIII (99% identity) | GTAC | M.HpyLIM6VII |
| 2475 | R | HpyPE17XVIIIP (97% identity) | GTAC | HpyLIM6VIIP |
| 2480 | M23 family metallopeptidase | |||
| 3345 | (Fe-S)-binding protein | |||
| 3350 | RM | HpyCOL104ORF3065P (87% identity) | HpyLIM6ORF3350P | |
| 3355 | 408 aa hypothetical protein | |||
| 4705 | flagellar hook protein FlgE | |||
| ??? | R | HpyME46XP (94% identity) | GTNNAC | HpyLIM6VIIIP |
| ??? | M | M.HpyPE21VI (97% identity) | GTNNAC | M.HpyLIM6VIII |
| 4720 | ATP-dependent helicase | |||
| 5590 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5595 | M | M.HpyU101X (99% identity) | TCNNGA | M.HpyLIM6ORF5595P |
| 5600 | R | HpyPE06ORF5830P (100% identity) | TCNNGA | HpyLIM6ORF5595P |
| 5605 | Laminin subunit alpha-2 precursor | |||
| 5790 | 144 aa hypothetical protein | |||
| 5795 | M | M.HpyMT5135ORF5270P (97% identity) | GCGC | M.HpyLIM6ORF5795P |
| 5800 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6970 | S41 family peptidase | |||
| 6975 | R | HpySP320ORF6710P (97% identity) | GANTC | HpyLIM6VP |
| 6980 | M | M.HpySP07III (98% identity) | GANTC | M.HpyLIM6V |
| 6985 | 358 aa hypothetical protein | |||
| 6980 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpy030ORF6525P (88% identity) | HpyLIM6ORF6985P | |
| 6995 | carboxylating nicotinate-nucleotide | |||
| 7045 | copper response regulator transcription factor | |||
| 7050 | R | HpyK027VP (99% identity) | GAAGA | HpyLIM6IVP |
| 7055 | M | M1.HpyLIM7V (98% identity) | GAAGA | M1.HpyLIM6IV |
| 7060 | M | M.HpyPE11III (100% identity) | GAAGA | M2.HpyLIM6IV |
| 7065 | site-specific DNA-methyltransferase | |||
| 7065 | site-specific DNA-methyltransferase | |||
| 7070 | R | HpyU420VIIIP (98% identity) | GATATC | HpyLIM6ORF7075P |
| 7075 | M | M.HpyJO6IX (98% identity) | GATATC | M.HpyLIM6ORF7075P |
| 7080 | site-specific DNA-methyltransferase | |||
| 7490 | DNA polymerase I | |||
| 7495 | S | S.HpyG001ORF7085P (96% identity) | CYANNNNNNTCC | S.HpyLIM6XII |
| 7500 | RM | HpyPE108ORF7065P (95% identity) | CYANNNNNNTCC | HpyLIM6XII |
| 7505 | ComF family protein | |||
| 7630 | YjgP/YjgQ family permease | |||
| ??? | M | M1.HpySW25X (78% identity) | CCATC | M1.HpyLIM6II |
| 7640 | M | M2.HpyR04IV (100% identity) | CCATC | M2.HpyLIM6II |
| 7645 | R | HpyT003IVP (97% identity) | CCATC | HpyLIM6IIP |
| 7650 | outer membrane protein | |||
| 7735 | 173 aa hypothetical protein | |||
| 7740 | RM | HpyC20ORFRP (78% identity) | HpyLIM6ORF7740P | |
| 7745 | 95 aa hypothetical protein | |||
| 7915 | 67 aa hypothetical protein | |||
| 7920 | M | M.HpyPU006XIII (98% identity) | TGCA | M.HpyLIM6X |
| 7925 | R | HpyU002XIVP (99% identity) | TGCA | HpyLIM6XP |
| 7930 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7060 | site-specific DNA-methyltransferase | |||
| 7065 | M | M.HpyJO3ORF6980P (93% identity) | M.HpyLIM6ORF7065P | |
| 7070 | restriction endonuclease | |||
| 7075 | Dam family site-specific | |||
| 7080 | M | M.Hpy173ORF1590P (94% identity) | M.HpyLIM6ORF7080P | |
| 7085 | R | HpyC010ORF545P (95% identity) | HpyLIM6ORF7080P | |
| 7090 | rod shape-determining protein MreC | |||
| 7135 | DNA/RNA non-specific endonuclease | |||
| 7140 | M | M.HpyNCI39ORFWP (96% identity) | M.HpyLIM6ORF7140P | |
| 7145 | R | HpyAR5ORF6685P (87% identity) | HpyLIM6ORF7140P | |
| 7150 | biotin synthase | |||
| 7745 | 95 aa hypothetical protein | |||
| 7750 | R | HpyC011ORF7555P (94% identity) | HpyLIM6ORF7755P | |
| ??? | M | M.HpyPO108ORF6915P (97% identity) | M.HpyLIM6ORF7755P | |
| 7765 | ATP-dependent DNA helicase RecG | |||