Helicobacter pylori LIM-007 |
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Putative Helicobacter pylori LIM-007 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,651,043 bp
GenBank #: CP051536
REBASE acronym: HpyLIM7
Org_num: 48209
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.Hpy1357ORFQP (99% identity) | CACNNNNNTC | S.HpyLIM7XI |
| ??? | M | M.HpyPE138ORF2155P (98% identity) | CACNNNNNTC | M.HpyLIM7XI |
| ??? | R | Hpyfe48ORF4915P (92% identity) | CACNNNNNTC | HpyLIM7XIP |
| ??? | S | S.HpyJ009ORF2990P (97% identity) | CTANNNNNNNNTTG | S.HpyLIM7ORFVP |
| ??? | R | HpyPU004XVP (93% identity) | HpyLIM7ORFWP | |
| ??? | S | S.Hpyfe124ORF4495P (98% identity) | S.HpyLIM7ORFWP | |
| ??? | M | M.HpyPU010VII (95% identity) | M.HpyLIM7ORFWP | |
| ??? | S | S.HpyAL7ORF6780P (96% identity) | S.HpyLIM7ORFYP | |
| ??? | M | M.HpyPU008ORF7520P (96% identity) | M.HpyLIM7ORFYP | |
| ??? | R | HpyPE111ORF7360P (98% identity) | HpyLIM7ORFYP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M1.HpyISR1XIV (98% identity) | CCTC | M1.HpyLIM7IV |
| ??? | M | M2.HpyC210VP (99% identity) | CCTC | M2.HpyLIM7IVP |
| ??? | R | HpyPE136VIP (99% identity) | CCTC | HpyLIM7IVP |
| ??? | R | HpyAs010VIP (96% identity) | GATC | HpyLIM7VIIP |
| ??? | M | M.HpyOK305ORFTP (97% identity) | GATC | M.HpyLIM7VII |
| ??? | M | M1.HpyCA8ORF870P (99% identity) | M.HpyLIM7ORFCP | |
| ??? | R | R1.HpyPE121ORF840P (95% identity) | R1.HpyLIM7ORFCP | |
| ??? | R | R2.HpySP706ORF840P (97% identity) | R2.HpyLIM7ORFCP | |
| ??? | R | HpyPE111IVP (93% identity) | CCGG | HpyLIM7XIIP |
| ??? | M | M.HpyPE106V (99% identity) | CCGG | M.HpyLIM7XII |
| ??? | M | M.HpyK024ORF1835P (100% identity) | M.HpyLIM7ORFKP | |
| ??? | restriction endonuclease subunit S | |||
| ??? | 543 aa hypothetical protein JP0074_00160 | |||
| ??? | M | M.HpyPE121II (98% identity) | ATTAAT | M.HpyLIM7III |
| ??? | cytosine-specific methyltransferase | |||
| ??? | 545 aa hypothetical protein VN0495_06670 | |||
| ??? | M | M.Hpyfe61ORF5000P (98% identity) | ACGT | M.HpyLIM7ORFHP |
| ??? | R | HpyHK711ORFTP (98% identity) | ACGT | HpyLIM7ORFHP |
| ??? | M | M.HpyPU002II (100% identity) | ACNGT | M.HpyLIM7II |
| ??? | R | HpyPE138ORF2250P (100% identity) | ACNGT | HpyLIM7IIP |
| ??? | RM | HpyMA06ORF2930P (88% identity) | HpyLIM7ORFUP | |
| ??? | R | HpyLIM1IXP (90% identity) | GTNNAC | HpyLIM7VIIIP |
| ??? | M | M.HpyCHN3VIII (97% identity) | GTNNAC | M.HpyLIM7VIII |
| ??? | M | M.HpyAR9ORF5265P (97% identity) | TCNNGA | M.HpyLIM7ORFLP |
| ??? | R | HpyPE19IIIP (100% identity) | TCNNGA | HpyLIM7ORFLP |
| ??? | M | M.Hpy4109ORFB1P (97% identity) | M.HpyLIM7ORFMP | |
| ??? | R | HpyPE138VP (95% identity) | GANTC | HpyLIM7VIP |
| ??? | M | M.HpyC122VI (99% identity) | GANTC | M.HpyLIM7VI |
| ??? | R | Hpy1681ORFFP (98% identity) | GAAGA | HpyLIM7VP |
| ??? | M | M1.HpyCA1IV (100% identity) | GAAGA | M1.HpyLIM7V |
| ??? | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.HpyLIM7V |
| ??? | S | S.HpyCRI3ORF7245P (67% identity) | S.HpyLIM7ORFEP | |
| ??? | RM | HpyPE138ORF7260P (98% identity) | HpyLIM7ORFEP | |
| ??? | modification methylase | |||
| ??? | RM | HpyGCT17ORFPP (70% identity) | HpyLIM7ORFTP | |
| ??? | M | M.HpyPE11XIII (100% identity) | CCWGG | M.HpyLIM7X |
| ??? | Eco57I restriction-modification methylase domain-containing protein | |||
| ??? | M | M.Hpy1768ORFWP (99% identity) | TGCA | M.HpyLIM7IX |
| ??? | R | HpyPE121XIP (99% identity) | TGCA | HpyLIM7IXP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpySH011ORF6600P (97% identity) | M.HpyLIM7ORFXP | |
| ??? | R | HpySORF7085P (97% identity) | HpyLIM7ORFXP | |
| ??? | M | M.HpyAs005ORF6790P (96% identity) | M.HpyLIM7ORFNP | |
| ??? | R | HpyAs005ORF6790P (94% identity) | HpyLIM7ORFNP | |
| ??? | R | HpyPU002ORF7075P (97% identity) | HpyLIM7ORFOP | |
| ??? | M | M.HpyPE119ORF7325P (98% identity) | M.HpyLIM7ORFOP | |