Helicobacter pylori LIM-009 |
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Putative Helicobacter pylori LIM-009 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,618,010 bp
GenBank #: CP051534
REBASE acronym: HpyLIM9
Org_num: 48211
All begin HG582_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2175 | RNA degradosome polyphosphate kinase | |||
| 2185 | S | S.HpyK016ORF2780P (98% identity) | CCANNNNNNTTT | S.HpyLIM9ORF2190P |
| 2190 | M | M.HpySP703ORF2125P (97% identity) | CCANNNNNNTTT | M.HpyLIM9ORF2190P |
| 2195 | R | HpyP005ORF2310P (91% identity) | CCANNNNNNTTT | HpyLIM9ORF2190P |
| 2200 | motility associated factor glycosyltransferase | |||
| 3855 | 53 aa hypothetical protein | |||
| 3860 | S | S.HpyPE112VI (98% identity) | CRTANNNNNNNTC | S.HpyLIM9XIII |
| 3865 | cadmium-translocating P-type ATPase | |||
| 6820 | cag pathogenicity island protein | |||
| 6825 | S | S.HpyK042ORF7265P (97% identity) | GAANNNNNNNTAYG | S.HpyLIM9XIV |
| 6830 | formyltetrahydrofolate deformylase | |||
| 7350 | 303 aa hypothetical protein | |||
| 7355 | S | S.HpyH137ORF505P (98% identity) | S.HpyLIM9ORF7365P | |
| 7360 | CAAX protease | |||
| 7365 | M | M.HpySP507ORF7385P (94% identity) | M.HpyLIM9ORF7365P | |
| 7370 | R | HpyC010XIVP (95% identity) | HpyLIM9ORF7365P | |
| 7375 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine deiminase | |||
| 255 | M | M1.HpyNCI40VI (97% identity) | CCTC | M1.HpyLIM9XII |
| 260 | M | M2.HpyZ004VIP (98% identity) | CCTC | M2.HpyLIM9XIIP |
| 265 | R | HpyPE121VP (97% identity) | CCTC | HpyLIM9XIIP |
| 270 | DNA cytosine methyltransferase | |||
| 475 | 339 aa hypothetical protein | |||
| 480 | M | M.HpyT021IX (96% identity) | GATC | M.HpyLIM9VI |
| 485 | alpha-1,2-fucosyltransferase | |||
| 530 | HNH endonuclease | |||
| 535 | M | M.HpySP314XVI (100% identity) | ACGG | M.HpyLIM9XV |
| 540 | methyl-accepting chemotaxis protein TlpB | |||
| 1295 | exodeoxyribonuclease VII large subunit | |||
| 1300 | M | M.HpyH027VII (97% identity) | TCGA | M.HpyLIM9X |
| 1305 | 204 aa hypothetical protein | |||
| 1305 | 204 aa hypothetical protein | |||
| ??? | R | HpySP12IIIP (98% identity) | CCGG | HpyLIM9ORF1315P |
| 1315 | M | M.HpyAL5VII (99% identity) | CCGG | M.HpyLIM9ORF1315P |
| 1320 | AAA domain-containing protein | |||
| 1550 | polysaccharide deacetylase | |||
| 1555 | R | HpyU002VIIP (95% identity) | CTNAG | HpyLIM9ORF1560P |
| 1560 | M | M.Hpyfe72ORF5515P (99% identity) | CTNAG | M.HpyLIM9ORF1560P |
| 1565 | 118 aa hypothetical protein | |||
| 2270 | Hop family outer membrane protein HopJ/HopK | |||
| 2275 | M | M.HpyKH13ORFVP (96% identity) | ATTAAT | M.HpyLIM9II |
| 2280 | glycosyltransferase family 9 protein | |||
| 2285 | translational GTPase TypA | |||
| 2290 | M | M.HpyPE109ORF2260P (100% identity) | M.HpyLIM9ORF2290P | |
| 2295 | tyrosine-type recombinase/integrase | |||
| 2360 | 131 aa hypothetical protein | |||
| ??? | M | M.HpySP301ORF2030P (92% identity) | M.HpyLIM9ORF2365P | |
| ??? | R | HpySW26ORF2350P (98% identity) | ACNGT | HpyLIM9ORF2365P |
| 2375 | DNA cytosine methyltransferase | |||
| 2370 | GIY-YIG nuclease family protein | |||
| 2375 | M | M.HpySP321ORF2385P (45% identity) | M.HpyLIM9ORF2375P | |
| 2380 | catalase | |||
| 2460 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2465 | M | M.HpyPE109XII (99% identity) | GTAC | M.HpyLIM9ORF2465P |
| 2470 | R | Hpy471I (93% identity) | GTAC | HpyLIM9ORF2465P |
| 2475 | M23 family metallopeptidase | |||
| 3265 | (Fe-S)-binding protein | |||
| 3270 | RM | HpyR03ORF3220P (86% identity) | HpyLIM9ORF3270P | |
| 3275 | outer membrane protein | |||
| 3350 | 3-5 exonuclease | |||
| 3355 | M | M.Hpyfe62ORF3865P (100% identity) | CCNNGG | M.HpyLIM9IV |
| 3360 | R | HpySP201IVP (99% identity) | CCNNGG | HpyLIM9IVP |
| 3365 | 3-5 exonuclease | |||
| 4005 | osmoprotection binding protein | |||
| 4010 | R | HpySP507IVP (100% identity) | CGWCG | HpyLIM9XIP |
| 4015 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.HpyLIM9XI |
| 4020 | ABC transporter permease subunit | |||
| 4465 | flagellar hook protein FlgE | |||
| ??? | R | HpyPE11XP (95% identity) | GTNNAC | HpyLIM9IXP |
| ??? | M | M.HpyMKF10ORF939P (98% identity) | GTNNAC | M.HpyLIM9IX |
| 4480 | ATP-dependent helicase | |||
| 5145 | FkbM family methyltransferase | |||
| 5150 | M | M.HpyPE109XV (100% identity) | TCNNGA | M.HpyLIM9VII |
| ??? | R | HpyCO4XP (98% identity) | TCNNGA | HpyLIM9VIIP |
| 5160 | Laminin subunit alpha-2 precursor | |||
| 5335 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyPE18XVII (97% identity) | M.HpyLIM9ORF5340P | |
| 5345 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5800 | HAD family hydrolase | |||
| 5805 | M | M.HpyPE109I (99% identity) | CATG | M.HpyLIM9I |
| 5810 | IceA2 protein | |||
| 6520 | S41 family peptidase | |||
| 6525 | RM | HpyPE09ORF6715P (54% identity) | HpyLIM9ORF6525P | |
| 6530 | N-6 DNA methylase | |||
| 6525 | DNA methyltransferase | |||
| 6530 | RM | HpyPE105ORF6410P (52% identity) | HpyLIM9ORF6530P | |
| 6535 | carboxylating nicotinate-nucleotide | |||
| 6585 | copper response regulator transcription factor | |||
| 6590 | R | HpyLI20IIP (97% identity) | GAAGA | HpyLIM9VP |
| 6595 | M | HpyCR1VIIIP (39% identity) | GAAGA | M1.HpyLIM9V |
| 6600 | M | M2.HpyG008III (99% identity) | GAAGA | M2.HpyLIM9V |
| 6605 | site-specific DNA-methyltransferase | |||
| 7030 | 294 aa hypothetical protein | |||
| 7035 | RM | HpyCOL303XII (91% identity) | GAAAAG | HpyLIM9XVI |
| 7040 | CAAX protease | |||
| 7110 | outer membrane protein | |||
| 7115 | R | HpyPOR110IIP (97% identity) | CCATC | HpyLIM9IIIP |
| 7120 | M | M1.HpyCO2IV (99% identity) | CCATC | M1.HpyLIM9III |
| ??? | M | M2.HpyPE105IV (78% identity) | CCATC | M2.HpyLIM9III |
| 7130 | YjgP/YjgQ family permease | |||
| 7255 | ComF family protein | |||
| 7260 | RM | HpySP803ORF7260P (97% identity) | HpyLIM9ORF7260P | |
| 7265 | S | S.HpyV002ORF7115P (94% identity) | S.HpyLIM9ORF7260P | |
| 7270 | DNA polymerase I | |||
| 7450 | 67 aa hypothetical protein | |||
| 7455 | M | M.HpyPO02XIV (100% identity) | TGCA | M.HpyLIM9VIII |
| 7460 | R | HpyPE105XIVP (100% identity) | TGCA | HpyLIM9VIIIP |
| 7465 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6600 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpy417ORF6735P (96% identity) | M.HpyLIM9ORF6605P | |
| 6615 | R | HpyBGR6ORF6565P (93% identity) | HpyLIM9ORF6605P | |
| 6620 | rod shape-determining protein MreC | |||
| 6670 | DNA/RNA non-specific endonuclease | |||
| 6675 | M | M.Hpyfe118ORF810P (91% identity) | M.HpyLIM9ORF6675P | |
| 6680 | R | HpyPE16ORF6960P (92% identity) | HpyLIM9ORF6675P | |
| 6685 | biotin synthase | |||
| 7010 | ATP-dependent DNA helicase RecG | |||
| 7015 | M | M.Hpyfe82ORF40P (96% identity) | M.HpyLIM9ORF7015P | |
| 7020 | R | HpyI002ORF7270P (95% identity) | HpyLIM9ORF7015P | |
| 7025 | 419 aa hypothetical protein | |||