Helicobacter pylori ASHA-005 |
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Putative Helicobacter pylori ASHA-005 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,630,559 bp
GenBank #: CP051435
REBASE acronym: HpyAs005
Org_num: 48199
All begin HGK50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2115 | RNA degradosome polyphosphate kinase | |||
| 2125 | S | S.Hpy464ORF2205P (99% identity) | CAGNNNNNTTA | S.HpyAs005XV |
| 2130 | M | M.Hpy464ORF2205P (100% identity) | CAGNNNNNTTA | M.HpyAs005XV |
| 2135 | R | HpyAs008XIVP (98% identity) | CAGNNNNNTTA | HpyAs005XVP |
| 2140 | motility associated factor glycosyltransferase | |||
| 3720 | outer membrane beta-barrel protein HofF | |||
| 3725 | S | S.Hpyfe13ORF4485P (71% identity) | S.HpyAs005ORF3725P | |
| 3730 | cadmium-translocating P-type ATPase | |||
| 4005 | hydroxyethylthiazole kinase | |||
| 4010 | R | HpyAs002ORF4335P (99% identity) | CAYNNNNNRTC | HpyAs005XVIIIP |
| 4015 | S | S.HpyGE20ORF2400P (96% identity) | CAYNNNNNRTC | S.HpyAs005XVIII |
| 4020 | M | M.Hpy464ORF2480P (98% identity) | CAYNNNNNRTC | M.HpyAs005XVIII |
| 4025 | DNA cytosine methyltransferase | |||
| 6925 | nickel-binding protein HpnL | |||
| 6930 | S | S.Hpyfe35ORF7575P (95% identity) | CCANNNNNNNTG | S.HpyAs005XVII |
| 6935 | formyltetrahydrofolate deformylase | |||
| 7410 | FAD-dependent thymidylate synthase | |||
| 7415 | S | S.HpyPE103XII (60% identity) | GARANNNNNNNTTG | S.HpyAs005XVI |
| 7420 | CAAX protease | |||
| 7425 | M | M.HpyAs004XIII (99% identity) | GARANNNNNNNTTG | M.HpyAs005XVI |
| 7430 | R | HpyAs002ORF7555P (99% identity) | GARANNNNNNNTTG | HpyAs005XVIP |
| 7435 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyAs002VI (99% identity) | CCTC | M1.HpyAs005VI |
| 250 | M | M2.HpyAs002VIP (99% identity) | CCTC | M2.HpyAs005VIP |
| 255 | R | HpyAs002VIP (100% identity) | CCTC | HpyAs005VIP |
| 260 | DNA cytosine methyltransferase | |||
| 440 | ACP S-malonyltransferase | |||
| 450 | R | HpyAs010VIP (100% identity) | GATC | HpyAs005XP |
| 455 | M | M.HpyAs010VI (100% identity) | GATC | M.HpyAs005X |
| 460 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1245 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyAs010ORF1260P (100% identity) | TCGA | M.HpyAs005XII |
| 1255 | 204 aa hypothetical protein | |||
| 1255 | 204 aa hypothetical protein | |||
| 1260 | R | HpyAs010ORF1275P (100% identity) | CCGG | HpyAs005IVP |
| 1265 | M | M.HpyAs002IV (100% identity) | CCGG | M.HpyAs005IV |
| 1270 | AAA domain-containing protein | |||
| 2200 | Hop family outer membrane protein HopJ/HopK | |||
| 2205 | M | M.HpyAs010III (99% identity) | ATTAAT | M.HpyAs005III |
| 2210 | glycosyltransferase family 9 protein | |||
| 2215 | translational GTPase TypA | |||
| 2220 | M | M.Hpyfe76ORF4780P (99% identity) | ACNGT | M.HpyAs005II |
| 2225 | R | HpyAs010IIP (100% identity) | ACNGT | HpyAs005IIP |
| 2230 | DNA cytosine methyltransferase | |||
| 2225 | GIY-YIG nuclease family protein | |||
| 2230 | M | M.HpyAs010ORF2245P (100% identity) | ACGT | M.HpyAs005ORF2230P |
| 2235 | R | HpyAs010ORF2245P (100% identity) | ACGT | HpyAs005ORF2230P |
| 2240 | catalase | |||
| 3125 | (Fe-S)-binding protein | |||
| 3130 | RM | HpyAS001ORF3250P (99% identity) | HpyAs005ORF3130P | |
| 3135 | 450 aa hypothetical protein | |||
| 3210 | 3-5 exonuclease | |||
| 3215 | M | M.HpyAs010IV (100% identity) | CCNNGG | M.HpyAs005V |
| 3220 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyAs005VP |
| 3225 | 3-5 exonuclease | |||
| 4020 | type I restriction-modification system subunit | |||
| 4025 | M | M.HpysHP34ORF6260P (100% identity) | M.HpyAs005ORF4025P | |
| 4030 | R | HpyAs010ORF2385P (100% identity) | HpyAs005ORF4025P | |
| 4035 | DNA-binding protein | |||
| 4440 | flagellar hook protein FlgE | |||
| ??? | R | HpySH011IXP (100% identity) | GTNNAC | HpyAs005XIP |
| ??? | M | M.HpyPU008XI (99% identity) | GTNNAC | M.HpyAs005XI |
| 4455 | ATP-dependent helicase | |||
| 5280 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5285 | M | M.HpyAs010VIII (99% identity) | TCNNGA | M.HpyAs005XIII |
| 5290 | R | HpyAs010VIIIP (100% identity) | TCNNGA | HpyAs005XIIIP |
| 5295 | Laminin subunit alpha-2 precursor | |||
| 5470 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAs010ORF5530P (100% identity) | M.HpyAs005ORF5475P | |
| 5480 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5925 | HAD family hydrolase | |||
| 5930 | M | M.Hpy169ORF6010P (99% identity) | CATG | M.HpyAs005I |
| 5935 | IceA2 protein | |||
| 6630 | PDZ domain-containing protein | |||
| 6635 | R | HpySH010VIIIP (97% identity) | GANTC | HpyAs005IXP |
| 6640 | M | M.HpyAs009X (100% identity) | GANTC | M.HpyAs005IX |
| 6645 | DNA methyltransferase | |||
| 6645 | DNA methyltransferase | |||
| 6650 | RM | HpyK051ORF255P (94% identity) | HpyAs005ORF6650P | |
| 6655 | carboxylating nicotinate-nucleotide | |||
| 6715 | site-specific DNA-methyltransferase | |||
| 6720 | R | HpyAs010ORF6785P (100% identity) | HpyAs005ORF6725P | |
| 6725 | M | M.HpyAs010ORF6785P (100% identity) | M.HpyAs005ORF6725P | |
| 6730 | site-specific DNA-methyltransferase | |||
| 6850 | glycosyltransferase family 8 protein | |||
| 6855 | M | M.HpySH010VII (99% identity) | GAATTC | M.HpyAs005VIII |
| ??? | R | HpyTW03VIIP (89% identity) | GAATTC | HpyAs005VIIIP |
| 6865 | UDP-N-acetylmuramate dehydrogenase | |||
| 7120 | DNA polymerase I | |||
| 7125 | S | S.Hpy20ORF7420P (99% identity) | CYANNNNNNTTC | S.HpyAs005VII |
| 7130 | RM | HpyAs004ORF7135P (99% identity) | CYANNNNNNTTC | HpyAs005VII |
| 7135 | ComF family protein | |||
| 7335 | transcription termination/antitermination | |||
| 7340 | RM | HpyAs004ORF7345P (99% identity) | HpyAs005ORF7340P | |
| 7345 | DEAD/DEAH box helicase family protein | |||
| 7510 | 67 aa hypothetical protein | |||
| 7515 | M | M.HpyAs010IX (100% identity) | TGCA | M.HpyAs005XIV |
| 7520 | R | HpyAs010IXP (100% identity) | TGCA | HpyAs005XIVP |
| 7525 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6725 | Dam family site-specific | |||
| 6730 | M | M.HpyAs004ORF6715P (99% identity) | M.HpyAs005ORF6730P | |
| 6735 | R | HpyAs010ORF6790P (100% identity) | HpyAs005ORF6730P | |
| 6740 | rod shape-determining protein MreC | |||
| 6785 | DNA/RNA non-specific endonuclease | |||
| 6790 | M | M.HpyAs002ORF6915P (100% identity) | M.HpyAs005ORF6790P | |
| 6795 | R | HpyAs002ORF6915P (97% identity) | HpyAs005ORF6790P | |
| 6800 | biotin synthase | |||
| 7340 | class I SAM-dependent DNA methyltransferase | |||
| 7345 | R | HpyAs004ORF7355P (100% identity) | HpyAs005ORF7350P | |
| ??? | M | M.HpyAs004ORF7355P (99% identity) | M.HpyAs005ORF7350P | |
| 7360 | ATP-dependent DNA helicase RecG | |||