Helicobacter pylori ASHA-004 |
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Putative Helicobacter pylori ASHA-004 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,615,144 bp
GenBank #: CP051434
REBASE acronym: HpyAs004
Org_num: 48198
All begin HGK49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2225 | RNA degradosome polyphosphate kinase | |||
| 2235 | S | S.HpyCA23VII (98% identity) | GACNNNNNTG | S.HpyAs004ORF2240P |
| 2240 | M | M.HpyAs006ORF2230P (99% identity) | GACNNNNNTG | M.HpyAs004ORF2240P |
| 2245 | R | HpySH014ORF2290P (97% identity) | GACNNNNNTG | HpyAs004ORF2240P |
| 2250 | motility associated factor glycosyltransferase | |||
| 2785 | cadmium-translocating P-type ATPase | |||
| 2790 | S | S.HpyPU001ORF2955P (66% identity) | S.HpyAs004ORF2790P | |
| 2795 | outer membrane beta-barrel protein HofF | |||
| 7420 | 59 aa hypothetical protein | |||
| 7425 | S | S.HpyC006VIII (86% identity) | GARANNNNNNNTTYG | S.HpyAs004XIII |
| 7430 | CAAX protease | |||
| 7435 | M | M.HpyAs002ORF7555P (100% identity) | GARANNNNNNNTTYG | M.HpyAs004XIII |
| 7440 | R | HpyAS001ORF7385P (99% identity) | GARANNNNNNNTTYG | HpyAs004XIIIP |
| 7445 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyU425V (99% identity) | CCTC | M1.HpyAs004XIV |
| 250 | M | M2.HpyAs010VP (98% identity) | CCTC | M2.HpyAs004XIVP |
| 255 | R | HpyAS001ORF250P (98% identity) | CCTC | HpyAs004XIVP |
| 260 | site-specific DNA-methyltransferase | |||
| 255 | HNH endonuclease | |||
| 260 | M | M.HpyAs006IX (100% identity) | GTSAC | M.HpyAs004X |
| 265 | R | HpyAs006IXP (100% identity) | GTSAC | HpyAs004XP |
| 270 | sodium/proline symporter PutP | |||
| 420 | ACP S-malonyltransferase | |||
| 430 | R | HpyAs010VIP (100% identity) | GATC | HpyAs004VIIIP |
| 435 | M | M.HpyAs010VI (100% identity) | GATC | M.HpyAs004VIII |
| 440 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1360 | exodeoxyribonuclease VII large subunit | |||
| 1365 | R | HpyAs006IIIP (100% identity) | CCGG | HpyAs004IVP |
| 1370 | M | M.HpySH011IV (99% identity) | CCGG | M.HpyAs004IV |
| 1375 | AAA domain-containing protein | |||
| 1605 | polysaccharide deacetylase | |||
| 1610 | R | HpySORF1620P (99% identity) | CTNAG | HpyAs004VIP |
| 1615 | M | M.HpySH010V (99% identity) | CTNAG | M.HpyAs004VI |
| 1620 | 122 aa hypothetical protein | |||
| 2310 | Hop family outer membrane protein HopJ/HopK | |||
| 2315 | M | M.HpySH014III (99% identity) | ATTAAT | M.HpyAs004III |
| 2320 | glycosyltransferase family 9 protein | |||
| 2325 | translational GTPase TypA | |||
| 2330 | M | M.HpyAs006II (100% identity) | ACNGT | M.HpyAs004II |
| 2335 | R | HpyAs006IIP (100% identity) | ACNGT | HpyAs004IIP |
| 2340 | catalase | |||
| 3280 | 3-5 exonuclease | |||
| 3285 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyAs004VP |
| 3290 | M | M.HpyAs010IV (100% identity) | CCNNGG | M.HpyAs004V |
| 3295 | 3-5 exonuclease | |||
| 4295 | restriction endonuclease subunit M | |||
| 4300 | M | M.HpysHP34ORF6260P (100% identity) | M.HpyAs004ORF4300P | |
| 4305 | R | HpyAs006ORF4150P (100% identity) | HpyAs004ORF4300P | |
| 4310 | phosphatase PAP2 family protein | |||
| 4565 | flagellar hook protein FlgE | |||
| ??? | R | HpySH011IXP (100% identity) | GTNNAC | HpyAs004IXP |
| ??? | M | M.HpyPU008XI (100% identity) | GTNNAC | M.HpyAs004IX |
| 4580 | ATP-dependent helicase | |||
| 5290 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5295 | M | M.HpySH007IX (100% identity) | TCNNGA | M.HpyAs004XI |
| 5300 | R | HpyAs006XP (99% identity) | TCNNGA | HpyAs004XIP |
| 5305 | Laminin subunit alpha-2 precursor | |||
| 5475 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyML1ORFA1P (98% identity) | M.HpyAs004ORF5480P | |
| 5485 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5930 | HAD family hydrolase | |||
| 5935 | M | M.HpyAs006I (100% identity) | CATG | M.HpyAs004I |
| 5940 | IceA2 protein | |||
| 6625 | DNA methyltransferase | |||
| 6630 | R | Hpy1768ORFRP (95% identity) | GANTC | HpyAs004VIIP |
| 6635 | M | M.HpyAs010ORF6705P (99% identity) | GANTC | M.HpyAs004VII |
| 6640 | N-6 DNA methylase | |||
| 6635 | site-specific DNA-methyltransferase | |||
| 6640 | RM | HpyOK30ORFLP (91% identity) | HpyAs004ORF6640P | |
| 6645 | carboxylating nicotinate-nucleotide | |||
| 6695 | copper response regulator transcription factor | |||
| 6700 | R | HpyAs006VP (82% identity) | HpyAs004ORF6700P | |
| 6705 | restriction endonuclease | |||
| 6700 | restriction endonuclease | |||
| 6705 | R | HpyAs010ORF6785P (100% identity) | HpyAs004ORF6710P | |
| 6710 | M | M.HpyAs010ORF6785P (100% identity) | M.HpyAs004ORF6710P | |
| 6715 | site-specific DNA-methyltransferase | |||
| 7125 | DNA polymerase I | |||
| 7130 | S | S.HpyTW03ORF6950P (65% identity) | S.HpyAs004ORF7135P | |
| 7135 | RM | HpyAs005VII (99% identity) | HpyAs004ORF7135P | |
| 7140 | ComF family protein | |||
| 7340 | transcription termination/antitermination | |||
| 7345 | RM | HpyAs005ORF7340P (99% identity) | HpyAs004ORF7345P | |
| 7350 | DEAD/DEAH box helicase family protein | |||
| 7520 | 67 aa hypothetical protein | |||
| 7525 | M | M.HpySH014XII (100% identity) | TGCA | M.HpyAs004XII |
| 7530 | R | HpyAs010IXP (100% identity) | TGCA | HpyAs004XIIP |
| 7535 | 93 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6710 | Dam family site-specific | |||
| ??? | M | M.HpyAs005ORF6730P (99% identity) | M.HpyAs004ORF6715P | |
| 6725 | R | HpyAs006ORF6555P (99% identity) | HpyAs004ORF6715P | |
| 6730 | rod shape-determining protein MreC | |||
| 6775 | DNA/RNA non-specific endonuclease | |||
| 6780 | M | M.HpyAS001ORF6745P (98% identity) | M.HpyAs004ORF6780P | |
| 6785 | R | HpyAs005ORF6790P (96% identity) | HpyAs004ORF6780P | |
| 6790 | biotin synthase | |||
| 7345 | class I SAM-dependent DNA methyltransferase | |||
| 7350 | R | HpyAs005ORF7350P (100% identity) | HpyAs004ORF7355P | |
| ??? | M | M.HpyAs005ORF7350P (99% identity) | M.HpyAs004ORF7355P | |
| 7365 | ATP-dependent DNA helicase RecG | |||