Helicobacter pylori ASHA-003 |
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Putative Helicobacter pylori ASHA-003 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,704,243 bp
GenBank #: CP051292
REBASE acronym: HpyAs003
Org_num: 48197
All begin HGI45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2145 | RNA degradosome polyphosphate kinase | |||
| 2155 | S | S.HpyAL9ORF2390P (98% identity) | S.HpyAs003ORF2160P | |
| 2160 | M | M.HpyAL1ORF2360P (95% identity) | M.HpyAs003ORF2160P | |
| 2165 | R | HpySP319ORF2285P (92% identity) | HpyAs003ORF2160P | |
| 2170 | motility associated factor glycosyltransferase | |||
| 3260 | phosphatase PAP2 family protein | |||
| 3265 | M | M.HpyC120ORF4025P (93% identity) | M.HpyAs003ORF3265P | |
| 3270 | S | S.Hpy75ORFDP (95% identity) | S.HpyAs003ORF3265P | |
| 3275 | R | HpyU417XIIP (97% identity) | HpyAs003ORF3265P | |
| 3280 | hydroxyethylthiazole kinase | |||
| 6950 | M48 family metallopeptidase | |||
| 6955 | R | HpyC016XVIP (96% identity) | CRTANNNNNNNTTTA | HpyAs003ORF6960P |
| 6960 | M | M.HpySP317IV (95% identity) | CRTANNNNNNNTTTA | M.HpyAs003ORF6960P |
| 6965 | S | S.HpyPE112VII (100% identity) | CRTANNNNNNNTTTA | S.HpyAs003ORF6960P |
| 6970 | FAD-dependent thymidylate synthase | |||
| 7470 | formyltetrahydrofolate deformylase | |||
| 7475 | S | S.HpyR09XV (96% identity) | S.HpyAs003ORF7475P | |
| 7480 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 255 | agmatine deiminase | |||
| 260 | M | M1.HpyU427V (98% identity) | CCTC | M1.HpyAs003V |
| 265 | M | M2.HpyPE112IVP (98% identity) | CCTC | M2.HpyAs003VP |
| 270 | restriction endonuclease | |||
| 265 | DNA cytosine methyltransferase | |||
| 270 | R | HpyAs003ORF290P (100% identity) | HpyAs003ORF275P | |
| 275 | M | M.HpySW19VI (9% identity) | M.HpyAs003ORF275P | |
| 280 | IS607 family transposase | |||
| 265 | DNA cytosine methyltransferase | |||
| 270 | R | HpyAs003ORF275P (100% identity) | HpyAs003ORF290P | |
| 275 | DNA (cytosine-5-)-methyltransferase | |||
| 280 | IS607 family transposase | |||
| 285 | transposase | |||
| 290 | M | M.HpyPE112V (90% identity) | M.HpyAs003ORF290P | |
| 295 | sodium/proline symporter PutP | |||
| 485 | 325 aa hypothetical protein | |||
| 490 | M | M.HpyPE112IX (100% identity) | GATC | M.HpyAs003VII |
| 495 | alpha-1,2-fucosyltransferase | |||
| 870 | elongation factor P | |||
| 875 | M | M.HpyPE112ORF855P (100% identity) | M1.HpyAs003ORF875P | |
| 880 | M | M.HpyU418ORF865P (100% identity) | M2.HpyAs003ORF875P | |
| 885 | R | R1.HpyPE112ORF855P (100% identity) | R1.HpyAs003ORF875P | |
| 890 | R | R2.HpyPE112ORF855P (100% identity) | R2.HpyAs003ORF875P | |
| 895 | pseudaminic acid synthase | |||
| 1285 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyPE112XII (100% identity) | TCGA | M.HpyAs003XI |
| 1295 | 204 aa hypothetical protein | |||
| 1295 | 204 aa hypothetical protein | |||
| 1300 | R | HpyPE112IIIP (100% identity) | CCGG | HpyAs003IVP |
| 1305 | M | M.HpyPE112III (100% identity) | CCGG | M.HpyAs003IV |
| 1310 | AAA domain-containing protein | |||
| 2245 | Hop family outer membrane protein HopJ/HopK | |||
| 2250 | M | M.HpyPE112II (99% identity) | ATTAAT | M.HpyAs003III |
| 2255 | glycosyltransferase family 9 protein | |||
| 2260 | translational GTPase TypA | |||
| 2265 | M | M.HpyPE108II (100% identity) | ACNGT | M.HpyAs003II |
| 2270 | R | HpyU432IIP (98% identity) | ACNGT | HpyAs003IIP |
| 2275 | DNA cytosine methyltransferase | |||
| 2270 | GIY-YIG nuclease family protein | |||
| 2275 | M | M.HpySP701ORF2275P (96% identity) | M.HpyAs003ORF2275P | |
| 2280 | catalase | |||
| 2365 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2370 | M | M.HpyPE112X (99% identity) | GTAC | M.HpyAs003VIII |
| 2375 | R | HpyPE112XP (100% identity) | GTAC | HpyAs003VIIIP |
| 2380 | M23 family metallopeptidase | |||
| 4040 | acetone carboxylase subunit gamma | |||
| 4045 | R | HpyU416ORF3405P (100% identity) | HpyAs003ORF4050P | |
| 4050 | M | M.HpyU416ORF3405P (97% identity) | M.HpyAs003ORF4050P | |
| 4055 | 3-5 exonuclease | |||
| 4120 | outer membrane protein | |||
| 4125 | RM | Hpy499ORF7105P (89% identity) | HpyAs003ORF4125P | |
| 4130 | (Fe-S)-binding protein | |||
| 4515 | flagellar hook protein FlgE | |||
| 4520 | R | HpyAR3IXP (97% identity) | GTNNAC | HpyAs003IXP |
| ??? | M | M.HpyPR08XII (96% identity) | GTNNAC | M.HpyAs003IX |
| 4530 | ATP-dependent helicase | |||
| 5395 | methyltransferase | |||
| 5400 | M | M.HpyCA20IX (99% identity) | TCNNGA | M.HpyAs003X |
| ??? | R | HpyC002IXP (97% identity) | TCNNGA | HpyAs003XP |
| 5410 | Laminin subunit alpha-2 precursor | |||
| 5595 | 144 aa hypothetical protein | |||
| 5600 | M | M.HpyPE112XVI (99% identity) | GCGC | M.HpyAs003ORF5600P |
| 5605 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6055 | HAD family hydrolase | |||
| 6060 | M | M.HpyPE112I (100% identity) | CATG | M.HpyAs003I |
| 6065 | IceA2 protein | |||
| 6775 | PDZ domain-containing protein | |||
| 6780 | R | HpyBR14VP (96% identity) | HpyAs003ORF6785P | |
| 6785 | M | M.HpyPE112ORF6565P (100% identity) | M.HpyAs003ORF6785P | |
| 6790 | transposase | |||
| 6805 | DNA methyltransferase | |||
| ??? | RM | HpyME40ORF6580P (87% identity) | HpyAs003ORF6810P | |
| 6815 | carboxylating nicotinate-nucleotide | |||
| 7040 | 719 aa hypothetical protein | |||
| 7045 | RM | HpyNP04ORF7395P (85% identity) | HpyAs003ORF7045P | |
| 7050 | CAAX protease | |||
| 7260 | ComF family protein | |||
| 7265 | RM | HpyPE112ORF7040P (99% identity) | HpyAs003ORF7265P | |
| 7270 | S | S.Hpy2018ORF14081P (69% identity) | S.HpyAs003ORF7265P | |
| 7275 | DNA polymerase I | |||
| 7545 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyMT5125IXP (100% identity) | GAATTC | HpyAs003VIP |
| 7555 | M | M.HpyU003VII (100% identity) | GAATTC | M.HpyAs003VI |
| 7560 | glycosyltransferase family 8 protein | |||
| 7700 | site-specific DNA-methyltransferase | |||
| 7705 | M | M.HpyPE112ORF7480P (96% identity) | M.HpyAs003ORF7705P | |
| 7710 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7020 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyPE19ORF7445P (98% identity) | M.HpyAs003ORF7025P | |
| 7035 | R | HpyPE105ORF6880P (94% identity) | HpyAs003ORF7025P | |
| 7040 | 719 aa hypothetical protein | |||
| 7625 | biotin synthase | |||
| 7630 | R | HpyPE112ORF7405P (96% identity) | HpyAs003ORF7635P | |
| 7635 | M | M.HpyCHN3ORF6765P (95% identity) | M.HpyAs003ORF7635P | |
| 7640 | DNA/RNA non-specific endonuclease | |||
| 7690 | rod shape-determining protein MreC | |||
| 7695 | R | HpyL032ORF6620P (92% identity) | HpyAs003ORF7700P | |
| 7700 | M | M.HpySP705ORF390P (95% identity) | M.HpyAs003ORF7700P | |
| 7705 | DUF1887 family protein | |||