Helicobacter pylori ASHA-001 |
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Putative Helicobacter pylori ASHA-001 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,616,437 bp
GenBank #: CP051290
REBASE acronym: HpyAS001
Org_num: 46981
All begin HGI43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2105 | RNA degradosome polyphosphate kinase | |||
| 2115 | S | S.HpyC001ORF3910P (98% identity) | S.HpyAS001ORF2120P | |
| 2120 | M | M.HpyAs004ORF2240P (99% identity) | M.HpyAS001ORF2120P | |
| 2125 | R | HpyAs002ORF2230P (99% identity) | HpyAS001ORF2120P | |
| 2130 | motility associated factor glycosyltransferase | |||
| 2360 | DNA cytosine methyltransferase | |||
| 2365 | M | M.HpyAs010ORF2390P (99% identity) | M.HpyAS001ORF2365P | |
| 2370 | S | S.Hpy4125ORFUP (67% identity) | S.HpyAS001ORF2365P | |
| 2375 | R | HpyAs002ORF4335P (99% identity) | HpyAS001ORF2365P | |
| 2380 | hydroxyethylthiazole kinase | |||
| 2660 | cadmium-translocating P-type ATPase | |||
| 2665 | S | S.HpyGU82AORFKP (79% identity) | S.HpyAS001ORF2665P | |
| 2670 | outer membrane beta-barrel protein HofF | |||
| 6880 | nickel-binding protein HpnL | |||
| 6885 | S | S.HpyAs010ORF6995P (98% identity) | S.HpyAS001ORF6885P | |
| 6890 | formyltetrahydrofolate deformylase | |||
| 7370 | FAD-dependent thymidylate synthase | |||
| 7375 | S | S.HpySH010ORF7600P (98% identity) | S.HpyAS001ORF7385P | |
| 7380 | CAAX protease | |||
| 7385 | M | M.Hpy169ORF7565P (99% identity) | M.HpyAS001ORF7385P | |
| 7390 | R | HpyAs004XIIIP (99% identity) | HpyAS001ORF7385P | |
| 7395 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | site-specific DNA-methyltransferase | |||
| 250 | M | M1.HpyAs006IV (99% identity) | CCTC | M1.HpyAS001ORF250P |
| 255 | M | M2.HpyAs006IVP (99% identity) | CCTC | M2.HpyAS001ORF250P |
| 260 | R | HpyAs004XIVP (98% identity) | CCTC | HpyAS001ORF250P |
| 265 | DNA cytosine methyltransferase | |||
| 420 | ACP S-malonyltransferase | |||
| 430 | R | HpyAs010VIP (100% identity) | GATC | HpyAS001VIIIP |
| 435 | M | M.HpyAs010VI (100% identity) | GATC | M.HpyAS001VIII |
| 440 | alpha-1,2-fucosyltransferase | |||
| 1235 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyAs010ORF1260P (100% identity) | TCGA | M.HpyAS001ORF1240P |
| 1245 | 204 aa hypothetical protein | |||
| 1245 | 204 aa hypothetical protein | |||
| 1250 | R | HpyAs010ORF1275P (100% identity) | CCGG | HpyAS001IVP |
| 1255 | M | M.HpyAs010ORF1275P (100% identity) | CCGG | M.HpyAS001IV |
| 1260 | AAA domain-containing protein | |||
| 2190 | Hop family outer membrane protein HopJ/HopK | |||
| 2195 | M | M.HpyAs010III (100% identity) | ATTAAT | M.HpyAS001III |
| 2200 | glycosyltransferase family 9 protein | |||
| 2205 | translational GTPase TypA | |||
| 2210 | M | M.HpyAs010II (100% identity) | ACNGT | M.HpyAS001II |
| 2215 | R | HpyAs010IIP (100% identity) | ACNGT | HpyAS001IIP |
| 2220 | DNA cytosine methyltransferase | |||
| 2215 | GIY-YIG nuclease family protein | |||
| 2220 | M | M.HpyAs010ORF2245P (100% identity) | ACGT | M.HpyAS001ORF2220P |
| 2225 | R | HpyAs010ORF2245P (100% identity) | ACGT | HpyAS001ORF2220P |
| 2230 | catalase | |||
| 2350 | DNA-binding protein | |||
| 2355 | R | HpyAs010ORF2385P (100% identity) | HpyAS001ORF2360P | |
| 2360 | M | M.HpyK022ORF4175P (100% identity) | M.HpyAS001ORF2360P | |
| 2365 | type I restriction-modification system subunit | |||
| 3155 | 3-5 exonuclease | |||
| 3160 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyAS001VP |
| 3165 | M | M.HpyAs010IV (100% identity) | CCNNGG | M.HpyAS001V |
| 3170 | 3-5 exonuclease | |||
| 3245 | 450 aa hypothetical protein | |||
| 3250 | RM | HpyAs002ORF3430P (99% identity) | HpyAS001ORF3250P | |
| 3255 | (Fe-S)-binding protein | |||
| 4405 | flagellar hook protein FlgE | |||
| 4410 | R | HpyAs010VIIP (99% identity) | GTNNAC | HpyAS001IXP |
| ??? | M | M.HpyAs010VII (100% identity) | GTNNAC | M.HpyAS001IX |
| 4420 | ATP-dependent helicase | |||
| 5245 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5250 | M | M.HpyAs010VIII (100% identity) | TCNNGA | M.HpyAS001X |
| 5255 | R | HpyAs010VIIIP (100% identity) | TCNNGA | HpyAS001XP |
| 5260 | Laminin subunit alpha-2 precursor | |||
| 5430 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAs010ORF5530P (100% identity) | M.HpyAS001ORF5435P | |
| 5440 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5885 | HAD family hydrolase | |||
| 5890 | M | M.HpyAs006I (100% identity) | CATG | M.HpyAS001I |
| 5895 | IceA2 protein | |||
| 6590 | restriction endonuclease | |||
| 6595 | M | M.HpyAs010ORF6705P (100% identity) | GANTC | M.HpyAS001VII |
| 6600 | N-6 DNA methylase | |||
| 6595 | site-specific DNA-methyltransferase | |||
| 6600 | RM | HpyJA105ORF635P (91% identity) | HpyAS001ORF6600P | |
| 6605 | carboxylating nicotinate-nucleotide | |||
| 6665 | site-specific DNA-methyltransferase | |||
| 6670 | R | HpyAs010ORF6785P (100% identity) | HpyAS001ORF6675P | |
| 6675 | M | M.HpyAs010ORF6785P (100% identity) | M.HpyAS001ORF6675P | |
| 6680 | site-specific DNA-methyltransferase | |||
| 7085 | DNA polymerase I | |||
| 7090 | S | S.HpyMA03ORF6950P (97% identity) | CYANNNNNNTTC | S.HpyAS001VI |
| 7095 | RM | HpyAs005VII (99% identity) | CYANNNNNNTTC | HpyAS001VI |
| 7100 | ComF family protein | |||
| 7300 | transcription termination/antitermination | |||
| 7305 | RM | HpyAs010ORF7405P (95% identity) | HpyAS001ORF7305P | |
| 7310 | DEAD/DEAH box helicase family protein | |||
| 7470 | 67 aa hypothetical protein | |||
| 7475 | M | M.HpyAs010IX (100% identity) | TGCA | M.HpyAS001XI |
| 7480 | R | HpyAs010IXP (100% identity) | TGCA | HpyAS001XIP |
| 7485 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6675 | Dam family site-specific | |||
| ??? | M | M.HpyTW09XIII (96% identity) | M.HpyAS001ORF6680P | |
| 6690 | R | HpyAs010ORF6790P (99% identity) | HpyAS001ORF6680P | |
| 6695 | rod shape-determining protein MreC | |||
| 6740 | DNA/RNA non-specific endonuclease | |||
| 6745 | M | M.HpyAs004ORF6780P (98% identity) | M.HpyAS001ORF6745P | |
| 6750 | R | HpyAs006ORF6625P (98% identity) | HpyAS001ORF6745P | |
| 6755 | biotin synthase | |||
| 7305 | class I SAM-dependent DNA methyltransferase | |||
| 7310 | R | HpyAs010ORF7415P (100% identity) | HpyAS001ORF7315P | |
| 7315 | M | M.HpyAs002ORF7480P (99% identity) | M.HpyAS001ORF7315P | |
| 7320 | ATP-dependent DNA helicase RecG | |||