Salmonella enterica subsp. enterica serovar Heidelberg CVM 28322 |
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Putative Salmonella enterica subsp. enterica serovar Heidelberg CVM 28322 RM systems
Ref: Zhao,S. et al. Genes (Basel) 11 (9), E1025 (2020)
REBASE ref # 31880
| Sequence length: | GenBank #: | |
| Chromosome: | 4,856,212 bp | CP051358 |
| plasmid p28322-1: | 234,536 bp | CP051359 |
| plasmid p28322-2: | 167,068 bp | CP051360 |
| plasmid p28322-3: | 95,358 bp | CP051361 |
REBASE acronym: Sen28322
Org_num: 46903
All begin HFS63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20095 | restriction endonuclease | |||
| 20100 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen28322ORF20105P |
| 20105 | M | M.Sens12373ORF19415P (100% identity) | GAGNNNNNNRTAYG | M.Sen28322ORF20105P |
| 20110 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen28322ORF20105P |
| 20115 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.StyTDamP (100% identity) | GATC | M.Sen28322DamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen28322ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 3200 | DUF2732 family protein | |||
| 3205 | M | M.SensSZL38ORF19965P (100% identity) | M.Sen28322ORF3205P | |
| 3210 | replication endonuclease | |||
| 9350 | phosphohydrolase | |||
| 9355 | M | M.SenZ223DcmP (100% identity) | CCWGG | M.Sen28322DcmP |
| 9360 | V | V.StyTDcmP (100% identity) | V.Sen28322DcmP | |
| 9365 | drug/metabolite exporter YedA | |||
| 14435 | YqaJ viral recombinase family protein | |||
| ??? | M | M.SenS321ORF16155P (100% identity) | GATC | M.Sen28322ORF14440P |
| 14445 | DUF4060 family protein | |||
| 20235 | YebC/PmpR family DNA-binding transcriptional | |||
| 20240 | R | Sens12373ORF19550P (100% identity) | Sen28322ORF20240P | |
| 20245 | fosfomycin resistance glutathione transferase | |||
| 20265 | RM | Sens12373ORF19575P (100% identity) | GATCAG | Sen28322ORF20265P |
| 20270 | DEAD/DEAH box helicase | |||
| plasmid p28322-1 | ||||
| 23680 | AAA family ATPase | |||
| 23685 | M | M.YpsF1ORFCP (85% identity) | M.Sen28322ORF23685P | |
| 23690 | 55 aa hypothetical protein | |||
| 24380 | 277 aa hypothetical protein | |||
| 24385 | M | M.YpsF1ORFDP (100% identity) | M.Sen28322ORF24385P | |
| 24390 | DNA-binding protein | |||
| plasmid p28322-2 | ||||
| 24795 | 100 aa hypothetical protein | |||
| 24800 | M | M.YrupYR1ORFCP (100% identity) | M.Sen28322ORF24800P | |
| 24805 | 143 aa hypothetical protein | |||
| plasmid p28322-3 | ||||
| 26000 | tellurite/colicin resistance protein | |||
| 26015 | M | M.Sen9102ORF23126P (100% identity) | M.Sen28322ORF26015P | |
| 26020 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17505 | 33 aa hypothetical protein | |||
| 17510 | R | Sens12373ORF17180P (100% identity) | CAGAG | Sen28322ORF17515P |
| 17515 | M | M.SenZ223ORF2150P (100% identity) | CAGAG | M.Sen28322ORF17515P |
| 17520 | MFS transporter | |||
| plasmid p28322-3 | ||||
| 26275 | modulator protein | |||
| 25755 | M | M.Sen68045ORF16165P (99% identity) | AGACC | M.Sen28322ORF25755P |
| 25760 | R | Sen63ORFKP (100% identity) | AGACC | Sen28322ORF25755P |
| 25765 | 250 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20090 | BrnT family toxin | |||
| 20095 | R | StyUK1MrrP (100% identity) | Sen28322MrrP | |
| 20100 | type I restriction-modification system | |||