Escherichia coli US03 |
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Putative Escherichia coli US03 RM systems
Ref: Biggel,M. et al. Nat Commun 11 (1), 5968 (2020)
REBASE ref # 31804
| Sequence length: | GenBank #: | |
| Chromosome: | 5,057,484 bp | CP048865 |
| plasmid pUS03_1: | 137,220 bp | CP048866 |
REBASE acronym: EcoUS03
Org_num: 46808
All begin G4278_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20055 | DUF262 domain-containing protein | |||
| 20060 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | EcoUS03ORF20065P |
| 20065 | M | M.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | M.EcoUS03ORF20065P |
| 20070 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.EcoUS03ORF20065P |
| 20075 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1775 | cell division protein DamX | |||
| 1780 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoUS03DamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2375 | DUF2556 domain-containing protein | |||
| 2380 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoUS03ORF2380P |
| 2385 | DNA-binding transcriptional regulator Fis | |||
| 9535 | phosphohydrolase | |||
| 9540 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoUS03DcmP |
| 9545 | V | V.EcosC25DcmP (100% identity) | V.EcoUS03DcmP | |
| 9550 | drug/metabolite exporter YedA | |||
| 12170 | helix-turn-helix domain-containing protein | |||
| 12175 | M | M.KaeCRE8ORF15605P (100% identity) | M.EcoUS03ORF12175P | |
| 12180 | 71 aa hypothetical protein | |||
| 20425 | BREX-1 system phosphatase PglZ type A | |||
| 20430 | RM | Kpn24835ORF14810P (100% identity) | EcoUS03ORF20430P | |
| 20435 | BREX system P-loop protein BrxC | |||
| 21420 | 527 aa hypothetical protein | |||
| 21425 | R | EcosS3ORF15775P (100% identity) | EcoUS03ORF21430P | |
| 21430 | M | M.EcosS3ORF15775P (100% identity) | M.EcoUS03ORF21430P | |
| 21435 | conjugal transfer protein TraG | |||
| plasmid pUS03_1 | ||||
| 24790 | 73 aa hypothetical protein | |||
| 24795 | M | M.Sfl2142ORF380P (100% identity) | M.EcoUS03ORF24795P | |
| 24800 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20285 | ATP-binding domain-containing protein | |||
| 20290 | M | M.EcoUTI89I (100% identity) | CACAG | M.EcoUS03ORF20290P |
| 20295 | R | EcoUTI89IP (100% identity) | CACAG | EcoUS03ORF20290P |
| 20300 | integrase arm-type DNA-binding domain-containing | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13670 | NinE family protein | |||
| 13675 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoUS03ORF13675P |
| 13680 | recombination protein NinB | |||