Edwardsiella ictaluri T1-1 |
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Putative Edwardsiella ictaluri T1-1 RM systems
Ref: Machimbirike,V.I. et al. unpublished
REBASE ref # 31948
| Sequence length: | GenBank #: | |
| Chromosome: | 3,787,397 bp | CP054060 |
| plasmid pEI-2083-2: | 36,669 bp | CP054061 |
REBASE acronym: EicT11
Org_num: 47234
All begin F8539_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 170 | 194 aa hypothetical protein | |||
| 175 | R | EicYCHORF180P (100% identity) | EicT11ORF180P | |
| 180 | M | M.EicYCHORF180P (100% identity) | M.EicT11ORF180P | |
| 185 | S | S1.EicYCHORF180P (100% identity) | S1.EicT11ORF180P | |
| 190 | IS256-like element ISEic2 family transposase | |||
| 195 | IS256-like element ISEic2 family transposase | |||
| 200 | S | S2.EicYCHORF180P (100% identity) | S2.EicT11ORF180P | |
| 205 | 328 aa hypothetical protein | |||
| 2535 | 140 aa hypothetical protein | |||
| 2540 | M | M.EicYCHORF2565P (100% identity) | GGANNNNNNNVTATC | M.EicT11ORF2540P |
| 2545 | S | S.EicYCHORF2565P (100% identity) | GGANNNNNNNVTATC | S.EicT11ORF2540P |
| 2550 | R | EicORF518P (99% identity) | GGANNNNNNNVTATC | EicT11ORF2540P |
| 2560 | G/U mismatch-specific DNA glycosylase | |||
| 4790 | 102 aa hypothetical protein | |||
| 4795 | M | M.Eic921ORF9360P (100% identity) | M.EicT11ORF4795P | |
| 4800 | S | S.EicYCHORF4815P (89% identity) | S.EicT11ORF4795P | |
| 4805 | IS5 family transposase | |||
| 4810 | 66 aa hypothetical protein | |||
| 4815 | R | EicYCHORF4815P (100% identity) | EicT11ORF4795P | |
| 4820 | AAA family ATPase | |||
| 11460 | transposase | |||
| 11465 | R | EicYCHORF11465P (100% identity) | CAYNNNNNNCCTC | EicT11ORF11480P |
| 11470 | Fic family protein | |||
| 11475 | S | S.EicYCHORF11465P (100% identity) | CAYNNNNNNCCTC | S.EicT11ORF11480P |
| 11480 | M | M.EicYCHORF11465P (100% identity) | CAYNNNNNNCCTC | M.EicT11ORF11480P |
| 11485 | 72 aa hypothetical protein | |||
| 15560 | M48 family metallopeptidase | |||
| 15565 | R | EicYCHORF15685P (100% identity) | EicT11ORF15585P | |
| 15570 | macro domain-containing protein | |||
| 15575 | DUF4433 domain-containing protein | |||
| 15580 | S | S.EicYCHORF15685P (100% identity) | S.EicT11ORF15585P | |
| 15585 | M | M.EicYCHORF15685P (100% identity) | M.EicT11ORF15585P | |
| 15590 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1385 | TIGR03747 family integrating conjugative element | |||
| 1390 | R | EicYCHORF1525P (100% identity) | EicT11ORF1395P | |
| 1395 | M | M.EicYCHORF1525P (100% identity) | M.EicT11ORF1395P | |
| 1400 | 113 aa hypothetical protein | |||
| 6980 | 90 aa hypothetical protein | |||
| 6985 | R | EicYCHORF6960P (100% identity) | EicT11ORF6990P | |
| ??? | M | M.Eic12122ORF3571P (100% identity) | M.EicT11ORF6990P | |
| 6995 | V | V.EicYCHORF6960P (100% identity) | V.EicT11ORF6990P | |
| 7000 | transposase | |||
| 16430 | ribulose-phosphate 3-epimerase | |||
| 16435 | M | M.EicYCHDamP (100% identity) | GATC | M.EicT11DamP |
| 16440 | SPOR domain-containing protein | |||
| plasmid pEI-2083-2 | ||||
| 18135 | 111 aa hypothetical protein | |||
| 18140 | M | M.PspJ15ORFCP (63% identity) | M.EicT11ORF18140P | |
| 18145 | 163 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4815 | type I restriction endonuclease subunit R | |||
| 4820 | R | EicYCHMcrBP (63% identity) | EicT11McrBP | |
| 4825 | R | EicYCHMcrCP (100% identity) | EicT11McrCP | |
| 4830 | 154 aa hypothetical protein | |||