Sulfurimonas denitrificans DSM 1251 |
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Putative Sulfurimonas denitrificans DSM 1251 RM systems
Ref: Sievert,S.M. et al. Appl. Environ. Microbiol. 74 (4), 1145-1156 (2008)
REBASE ref # 9168
Complete sequence: 2,201,561 bp
GenBank #: CP000153 (NC_007575)
REBASE acronym: SdeA
Org_num: 4197
All begin Suden_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 940 | 72 aa hypothetical protein | |||
| 941 | S | S1.Asp23ORF13190P (91% identity) | S.SdeAORF941P | |
| 942 | Type I restriction-modification system M | |||
| 941 | Restriction modification system DNA specificity | |||
| 942 | M | M.Acr48ORF11345P (95% identity) | TTCANNNNNNNTTTY | M.SdeAV |
| 943 | DNA-damage-inducible protein d | |||
| 944 | S | S2.Acr48ORF11345P (64% identity) | TTCANNNNNNNTTTY | S.SdeAV |
| 945 | 423 aa hypothetical protein | |||
| 946 | 181 aa hypothetical protein | |||
| 947 | transcriptional regulator | |||
| 948 | R | Acr48ORF11345P (96% identity) | TTCANNNNNNNTTTY | SdeAVP |
| 949 | Protein of unknown function DUF45 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 120 | 69 aa conserved hypothetical protein | |||
| 121 | M | M.Sde6946ORF2012P (64% identity) | CGCG | M.SdeAORF121P |
| 122 | 345 aa hypothetical protein | |||
| 126 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | |||
| 127 | M | 64 aa hypothetical protein | CATG | M.SdeAORF127P |
| 128 | Type II site-specific deoxyribonuclease | |||
| 127 | 64 aa hypothetical protein | |||
| 128 | R | AccI (78% identity) | GTMKAC | SdeAIVP |
| 129 | M | M.AccI (73% identity) | GTMKAC | M.SdeAIV |
| 130 | Site-specific DNA-methyltransferase | |||
| 129 | N-6 DNA methylase | |||
| 130 | M | M2.AbuAB42ORFEP (68% identity) | CATG | M.SdeAIII |
| 131 | O-sialoglycoprotein endopeptidase | |||
| 477 | Protein of unknown function DUF323 | |||
| 478 | RM | Pag1268ORF929P (50% identity) | CAGRAG | SdeAI |
| 479 | pseudogene | |||
| 536 | Resistance-Nodulation-Cell Division Superfamily | |||
| ??? | RM | AjuhyORF10785P (51% identity) | SdeAORF537P | |
| 539 | Protein of unknown function DUF1016 | |||
| 1562 | Uracil-DNA glycosylase | |||
| 1563 | R | SspSCADCORF10380P (66% identity) | CCWGG | SdeAII |
| 1564 | 257 aa conserved hypothetical protein | |||
| 1565 | M | M.SspSCADCORF10380P (67% identity) | CCNGG | M.SdeAII |
| 1566 | Transcription-repair coupling factor | |||
| 1838 | Hemerythrin HHE cation binding region | |||
| 1839 | M | M.PspFMAR1ORFJP (62% identity) | CCGG | M.SdeAORF1839P |
| 1840 | DNA-directed DNA polymerase | |||
| 1853 | ATPase | |||
| 1854 | R | Acr8301ORF2030P (61% identity) | GATC | SdeAVIP |
| 1855 | M | M.AmaSH4DORF10647P (71% identity) | GATC | M.SdeAVI |
| 1856 | Short-chain dehydrogenase/reductase SDR | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1354 | pseudogene | |||
| 1355 | M | M.Psp1327ORF7745P (41% identity) | M.SdeAORF1355P | |
| 1356 | 65 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 699 | 334 aa hypothetical protein | |||
| 700 | R | ATPase | SdeAMcrBP | |
| 701 | 736 aa hypothetical protein | |||
| 1596 | 334 aa hypothetical protein | |||
| 1597 | R | ATPase | SdeAMcrB2P | |
| 1598 | 695 aa hypothetical protein | |||