Glaesserella parasuis LHDR_HPS_1_2 |
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Putative Glaesserella parasuis LHDR_HPS_1_2 RM systems
Ref: Zhang,C. unpublished
REBASE ref # 30980
Complete sequence: 2,279,268 bp
GenBank #: CP065386
REBASE acronym: GpaHPS12
Org_num: 47791
All begin I5Z97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5145 | 3-phosphoserine/phosphohydroxythreonine | |||
| 5150 | M | M.GpaHF57ORF5595P (99% identity) | M.GpaHPS12ORF5150P | |
| 5155 | S | S.Gpa1433ORF4860P (63% identity) | S.GpaHPS12ORF5150P | |
| 5160 | R | HpaNagORF319P (99% identity) | GpaHPS12ORF5150P | |
| 5165 | histidinol-phosphate transaminase | |||
| 9410 | 87 aa hypothetical protein | |||
| 9415 | R | HpaSW140ORF1427P (99% identity) | GpaHPS12ORF9440P | |
| 9420 | 132 aa hypothetical protein | |||
| 9425 | DUF1829 domain-containing protein | |||
| 9430 | S | S3.Nsp55ORF4410P (41% identity) | S.GpaHPS12ORF9440P | |
| 9435 | AAA family ATPase | |||
| 9440 | M | M.Hpa318ORF8280P (99% identity) | M.GpaHPS12ORF9440P | |
| 9445 | D-lactate dehydrogenase | |||
| 9680 | PIN domain-containing protein | |||
| 9690 | R | Hpa120103ORFAP (60% identity) | GpaHPS12ORF9690P | |
| 9695 | M48 family metallopeptidase | |||
| 10735 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| 10740 | S | S.Hpa74III (99% identity) | GTANNNNNNNCTTG | S.GpaHPS12ORF10755P |
| 10745 | R | Gpa1433ORF10775P (99% identity) | GTANNNNNNNCTTG | GpaHPS12ORF10755P |
| 10750 | DNA binding domain-containing protein | |||
| 10755 | M | M.GpaZ44ORF420P (100% identity) | GTANNNNNNNCTTG | M.GpaHPS12ORF10755P |
| 10760 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 335 | valine--tRNA ligase | |||
| 340 | M | M.Gpad76ORF340P (99% identity) | AAGCTT | M.GpaHPS12ORF340P |
| 345 | R | Gpad76ORF340P (100% identity) | AAGCTT | GpaHPS12ORF340P |
| 350 | zeta toxin family protein | |||
| 945 | winged helix-turn-helix transcriptional | |||
| 950 | RM | GpaHPS7ORF940P (100% identity) | GpaHPS12ORF950P | |
| 955 | S | S1.Gpa412ORF11740P (98% identity) | S.GpaHPS12ORF950P | |
| 960 | restriction endonuclease subunit S | |||
| 1240 | type II toxin-antitoxin system VapC family | |||
| 1245 | RM | HpaSH03ORF7930P (100% identity) | GpaHPS12ORF1255P | |
| 1250 | M | M2.HpaSH03ORF7930P (100% identity) | M2.GpaHPS12ORF1255P | |
| 1255 | M | M1.HpaSH03ORF7930P (100% identity) | M1.GpaHPS12ORF1255P | |
| 1260 | 134 aa hypothetical protein | |||
| 3230 | sodium-dependent transporter | |||
| 3235 | M | M.HpaST41ORF8035P (100% identity) | GATC | M.GpaHPS12ORF3235P |
| 3240 | 3-dehydroquinate synthase | |||
| 7175 | 444 aa hypothetical protein | |||
| 7180 | M | M1.GpaZ44ORF4410P (98% identity) | M.GpaHPS12ORF7180P | |
| 7185 | 58 aa hypothetical protein | |||
| 8155 | Com family DNA-binding transcriptional | |||
| 8160 | M | M.Gpad76ORF8420P (100% identity) | M.GpaHPS12ORF8160P | |
| 8165 | 86 aa hypothetical protein | |||
| 9745 | efflux RND transporter periplasmic adaptor | |||
| 9750 | S | S.HpaSW140ORF1140P (100% identity) | S.GpaHPS12ORF9755P | |
| 9755 | RM | GpaZ44ORF11690P (99% identity) | GAGNNNNRTAA | GpaHPS12ORF9755P |
| 9760 | 174 aa hypothetical protein | |||
| 9775 | 179 aa hypothetical protein | |||
| 9780 | R | Gpad76ORF10080P (100% identity) | GpaHPS12ORF9785P | |
| 9785 | M | M.Gpad76ORF10080P (100% identity) | M.GpaHPS12ORF9785P | |
| 9790 | NADH:flavin oxidoreductase/NADH oxidase family | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 805 | Fic family protein | |||
| 810 | R | HpaNagORF1223P (99% identity) | GpaHPS12ORF815P | |
| ??? | M | M.Hpa906ORF25P (95% identity) | M.GpaHPS12ORF815P | |
| 825 | ketol-acid reductoisomerase | |||