Escherichia coli 18SC04V04-EC |
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Putative Escherichia coli 18SC04V04-EC RM systems
Ref: Tate,H. et al. unpublished
REBASE ref # 31494
| Sequence length: | GenBank #: | |
| Chromosome: | 4,969,382 bp | CP063739 |
| plasmid pVPS18EC0467-1: | 205,906 bp | CP063741 |
| plasmid pVPS18EC0467-2: | 171,727 bp | CP063740 |
REBASE acronym: EcoV04
Org_num: 45562
All begin IO771_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3380 | endoribonuclease SymE | |||
| 3385 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.EcoV04ORF3390P |
| 3390 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoV04ORF3390P |
| 3395 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | EcoV04ORF3390P |
| 3400 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 905 | replication endonuclease | |||
| 910 | R | EcoR7ORF1275P (99% identity) | TGGCCA | EcoV04ORF915P |
| 915 | M | M.Ecoww7ORF20P (100% identity) | TGGCCA | M.EcoV04ORF915P |
| 920 | phage portal protein | |||
| 3185 | AAA family ATPase | |||
| 3190 | R | SflN101ORF11875P (100% identity) | EcoV04ORF3190P | |
| 3195 | HNH endonuclease | |||
| 12545 | 92 aa hypothetical protein | |||
| 12550 | M | M.Eco40C21ORF11415P (100% identity) | M.EcoV04ORF12550P | |
| 12555 | TrmB family transcriptional regulator | |||
| 14370 | LexA family transcriptional regulator | |||
| 14375 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoV04ORF14375P |
| 14380 | PerC family transcriptional regulator | |||
| 14895 | drug/metabolite exporter YedA | |||
| 14900 | V | V.SflFF64DcmP (100% identity) | V.EcoV04DcmP | |
| 14905 | M | M.EcoC199DcmP (100% identity) | CCWGG | M.EcoV04DcmP |
| 14910 | phosphohydrolase | |||
| 21605 | DNA-binding transcriptional regulator Fis | |||
| 21610 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoV04ORF21610P |
| 21615 | DUF2556 family protein | |||
| 22135 | ribulose-phosphate 3-epimerase | |||
| 22140 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoV04DamP |
| 22145 | cell division protein DamX | |||
| plasmid pVPS18EC0467-1 | ||||
| 25790 | 103 aa hypothetical protein | |||
| 25795 | M | M.EcoO6877ORFAP (100% identity) | SAY | M.EcoV04ORF25795P |
| 25800 | 73 aa hypothetical protein | |||
| plasmid pVPS18EC0467-2 | ||||
| 24275 | 73 aa hypothetical protein | |||
| 24280 | M | M.Eco301ORFKP (100% identity) | M.EcoV04ORF24280P | |
| 24285 | 96 aa hypothetical protein | |||
| 24575 | 73 aa hypothetical protein | |||
| 24580 | M | M.Sen4346ORF22715P (100% identity) | M.EcoV04ORF24580P | |
| 24585 | DinI-like family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3175 | 128 aa hypothetical protein | |||
| 3180 | R | SflN101McrCP (100% identity) | EcoV04McrCP | |
| 3185 | R | SflN101McrBP (100% identity) | EcoV04McrBP | |
| 3190 | HNH endonuclease | |||
| 3365 | DUF1127 domain-containing protein | |||
| 3370 | R | SflLIN8GmrSDP (42% identity) | EcoV04GmrSP | |
| 3375 | R | Ecos673GmrDP (100% identity) | EcoV04GmrDP | |
| 3380 | endoribonuclease SymE | |||
| 10275 | site-specific DNA recombinase | |||
| 10280 | R | Eco301ORFEP (100% identity) | YCGR | EcoV04ORF10280P |
| 10285 | isocitrate dehydrogenase | |||