Salmonella enterica subsp. enterica serovar Enteritidis R17.4111 |
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Putative Salmonella enterica subsp. enterica serovar Enteritidis R17.4111 RM systems
Ref: Chiou,C.-S. et al. unpublished
REBASE ref # 28599
| Sequence length: | GenBank #: | |
| Chromosome: | 4,713,149 bp | CP063289 |
| plasmid pR17.4111_p113k: | 113,786 bp | CP063290 |
REBASE acronym: Sen4111
Org_num: 45708
All begin IN817_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19600 | NERD domain-containing protein/DEAD/DEAH box | |||
| 19605 | M | M.SspSAL045ORF19385P (100% identity) | GGYANNNNNNTCG | M.Sen4111ORF19605P |
| 19610 | S | S.StySBLI (100% identity) | GGYANNNNNNTCG | S.Sen4111ORF19605P |
| 19615 | R | StySBLI (100% identity) | GGYANNNNNNTCG | Sen4111ORF19605P |
| 19620 | DUF91 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1775 | cell division protein DamX | |||
| 1780 | M | M.StyTDamP (100% identity) | GATC | M.Sen4111DamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2265 | DUF2556 family protein | |||
| 2270 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen4111ORF2270P |
| 2275 | DNA-binding transcriptional regulator Fis | |||
| 9125 | PerC family transcriptional regulator | |||
| ??? | M | M.SspSAL045ORF8900P (100% identity) | M.Sen4111ORF9130P | |
| 9135 | RusA family crossover junction | |||
| 13975 | drug/metabolite exporter YedA | |||
| 13980 | V | V.StyUK1DcmP (100% identity) | V.Sen4111DcmP | |
| 13985 | M | M.SspZ69DcmP (100% identity) | CCWGG | M.Sen4111DcmP |
| 13990 | phosphohydrolase | |||
| 19730 | YebC/PmpR family DNA-binding transcriptional | |||
| 19735 | R | SspSAL045ORF19515P (100% identity) | Sen4111ORF19735P | |
| 19740 | IS3 family transposase | |||
| plasmid pR17.4111_p113k | ||||
| 22915 | IS6-like element IS26 family transposase | |||
| 22920 | R | Ssp3CORF24390P (100% identity) | CCWGG | Sen4111ORF22925P |
| 22925 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Sen4111ORF22925P |
| 22930 | IS1 family transposase | |||
| 23090 | 103 aa hypothetical protein | |||
| 23095 | M | M.SspPIBORF23080P (100% identity) | M.Sen4111ORF23095P | |
| 23100 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17505 | 33 aa hypothetical protein | |||
| 17510 | R | SspSAL045ORF17295P (100% identity) | CAGAG | Sen4111ORF17515P |
| 17515 | M | M.SspSAL045ORF17295P (100% identity) | CAGAG | M.Sen4111ORF17515P |
| 17520 | MFS transporter | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5445 | 3-5 exonuclease | |||
| 5450 | M | M.Sens24219ORF5575P (100% identity) | M.Sen4111ORF5450P | |
| 5455 | replication endonuclease | |||