Helicobacter cinaedi 2017D-0197 |
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Putative Helicobacter cinaedi 2017D-0197 RM systems
Ref: Lane,C. unpublished
REBASE ref # 31448
Complete sequence: 2,218,389 bp
GenBank #: CP063086
REBASE acronym: Hci197
Org_num: 45447
All begin HW245_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3830 | Crp/Fnr family transcriptional regulator | |||
| 3835 | R | HciP01DORFHP (98% identity) | Hci197ORF3840P | |
| 3840 | M | M.HciP01DORFHP (100% identity) | M.Hci197ORF3840P | |
| 3845 | 94 aa hypothetical protein | |||
| 3850 | type II toxin-antitoxin system RelE/ParE family | |||
| 3855 | S | S.Hci60917ORF9650P (100% identity) | S.Hci197ORF3840P | |
| 3860 | cation transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1070 | cysteine desulfurase, NifS family | |||
| ??? | M | M.Hci7095ORF7670P (100% identity) | M.Hci197ORF1075P | |
| 1080 | R | HciP01DORFZP (100% identity) | Hci197ORF1075P | |
| 1085 | iron-sulfur cluster assembly scaffold protein | |||
| 1475 | 249 aa hypothetical protein | |||
| 1480 | M | M.HciP01DORFBP (100% identity) | M.Hci197ORF1480P | |
| 1485 | class I SAM-dependent methyltransferase | |||
| 3280 | TSUP family transporter | |||
| ??? | RM | HciP01DORFAP (97% identity) | Hci197ORF3285P | |
| 3295 | NAD(P)-dependent alcohol dehydrogenase | |||
| 3875 | argininosuccinate synthase | |||
| 3880 | M | M.HciP01DORFGP (100% identity) | M.Hci197ORF3880P | |
| 3885 | R | HciP01DORFGP (100% identity) | Hci197ORF3880P | |
| 3890 | septum site-determining protein MinD | |||
| 4245 | MFS transporter | |||
| 4250 | R | HciP01DORFKP (100% identity) | Hci197ORF4255P | |
| 4255 | M | M2.HciP01DORFKP (77% identity) | M.Hci197ORF4255P | |
| 4260 | DNA adenine methylase | |||
| 4260 | DNA adenine methylase | |||
| 4265 | R | HciP01DORFJP (100% identity) | Hci197ORF4270P | |
| 4270 | M | M2.HciP01DORFJP (100% identity) | M2.Hci197ORF4270P | |
| 4275 | M | M1.HciP01DORFJP (100% identity) | M1.Hci197ORF4270P | |
| 4280 | cupin domain-containing protein | |||
| 4845 | class II aldolase/adducin family protein | |||
| 4850 | R | HciP01DORFFP (100% identity) | Hci197ORF4855P | |
| 4855 | M | M.HciORF2076P (100% identity) | M.Hci197ORF4855P | |
| 4860 | 53 aa hypothetical protein | |||
| 5235 | alanine--tRNA ligase | |||
| 5240 | M | M.HciP01DORFMP (100% identity) | M.Hci197ORF5240P | |
| 5245 | 359 aa hypothetical protein | |||
| 5250 | R | HciP01DORFMP (100% identity) | Hci197ORF5240P | |
| 5255 | site-specific DNA-methyltransferase | |||
| 5250 | 575 aa hypothetical protein | |||
| 5255 | M | M1.Hci629ORFJP (50% identity) | M1.Hci197ORF5255P | |
| ??? | M | M1.Hci629ORFJP (47% identity) | M2.Hci197ORF5255P | |
| 5265 | R | HciP01DORFLP (100% identity) | Hci197ORF5255P | |
| 5270 | paraslipin | |||
| 5395 | 158 aa hypothetical protein | |||
| 5400 | RM | Hci60917ORF8120P (84% identity) | Hci197ORF5400P | |
| 5405 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase | |||
| 6115 | NgoFVII family restriction endonuclease | |||
| 6120 | RM | HciP01DORFEP (100% identity) | Hci197ORF6120P | |
| 6125 | type II toxin-antitoxin system HicB family | |||
| 7570 | 117 aa hypothetical protein | |||
| 7575 | M | M.HciP01DORFDP (100% identity) | M.Hci197ORF7575P | |
| 7580 | R | HciP01DORFDP (100% identity) | Hci197ORF7575P | |
| 7585 | 51 aa hypothetical protein | |||
| 7765 | site-specific DNA-methyltransferase | |||
| ??? | R | HciP01DORFPP (100% identity) | Hci197ORF7770P | |
| 7775 | site-specific DNA-methyltransferase | |||
| 9560 | DEAD/DEAH box helicase family protein | |||
| 9565 | RM | HciORF1073P (95% identity) | Hci197ORF9565P | |
| 9575 | sodium:proton antiporter | |||
| 9685 | 100 aa hypothetical protein | |||
| 9690 | RM | HciP01DORFRP (100% identity) | Hci197ORF9690P | |
| 9695 | arginyltransferase | |||
| 10200 | RDD family protein | |||
| 10205 | M | M.Hci60917ORF5345P (100% identity) | M.Hci197ORF10205P | |
| 10210 | DUF262 domain-containing protein | |||
| 10290 | glutamine-hydrolyzing GMP synthase | |||
| 10295 | R | HciP01DORFTP (97% identity) | Hci197ORF10300P | |
| 10300 | M | M.HciP01DORFTP (97% identity) | M.Hci197ORF10300P | |
| 10305 | Eco57I restriction-modification methylase | |||
| 10300 | Eco57I restriction-modification methylase | |||
| 10305 | M | M.HciP01DORFSP (95% identity) | M.Hci197ORF10305P | |
| ??? | R | Hci629ORFSP (99% identity) | Hci197ORF10305P | |
| 10315 | [cytidine(C)-cytidine(C)-adenosine (A)]-adding | |||
| 10915 | PLP-dependent transferase | |||
| 10920 | M | M.HciP01DORFYP (100% identity) | M.Hci197ORF10920P | |
| ??? | R | Hci798ORFTP (99% identity) | Hci197ORF10920P | |
| 10935 | cysteine synthase family protein | |||
| 10935 | cysteine synthase family protein | |||
| ??? | M | M.Hca1463ORFPP (95% identity) | M.Hci197ORF10940P | |
| 10945 | R | HciP01DORFXP (100% identity) | Hci197ORF10940P | |
| 10950 | 160 aa hypothetical protein | |||
| 10955 | 231 aa hypothetical protein | |||
| 10960 | M | M.HciP01DORFVP (94% identity) | M.Hci197ORF10960P | |
| 10965 | 54 aa hypothetical protein | |||
| 10965 | 54 aa hypothetical protein | |||
| ??? | M | M.HciP01DORFUP (98% identity) | M.Hci197ORF10970P | |
| 10975 | HNH endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3105 | cache domain-containing protein | |||
| 3110 | R | Hci7095ORF9755P (100% identity) | Hci197ORF3125P | |
| 3115 | virulence RhuM family protein | |||
| 3120 | ATP-binding protein | |||
| 3125 | M | M.HciP01DORFB1P (100% identity) | M.Hci197ORF3125P | |
| 3130 | saccharopine dehydrogenase family protein | |||
| 4285 | MerR family transcriptional regulator | |||
| 4290 | R | HciP01DORFIP (99% identity) | Hci197ORF4295P | |
| 4295 | M | M.HciP01DORFIP (100% identity) | M.Hci197ORF4295P | |
| 4300 | aldo/keto reductase | |||
| 7770 | restriction endonuclease | |||
| 7775 | M | M.HciP01DORFOP (100% identity) | M.Hci197ORF7775P | |
| 7780 | R | HciP01DORFOP (100% identity) | Hci197ORF7775P | |
| 7785 | 45 aa hypothetical protein | |||