Escherichia coli UTI89 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli UTI89 RM systems
Ref: Miryala,S. and Srinandan,C.S. unpublished
REBASE ref # 31400
Complete sequence: 5,065,741 bp
GenBank #: CP062228
REBASE acronym: EcoI89
Org_num: 45278
All begin IFE20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 23730 | endoribonuclease SymE | |||
| 23735 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoI89ORF23740P |
| 23740 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoI89ORF23740P |
| 23745 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoI89ORF23740P |
| 23750 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6910 | TrmB family transcriptional regulator | |||
| 6915 | M | M.SboBSORF1444P (100% identity) | A | M.EcoI89ORF6915P |
| 6935 | DUF1737 domain-containing protein | |||
| 10225 | drug/metabolite exporter YedA | |||
| 10230 | V | V.SflC32DcmP (74% identity) | V.EcoI89DcmP | |
| 10235 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoI89DcmP |
| 10240 | phosphohydrolase | |||
| 14185 | LexA family transcriptional regulator | |||
| 14190 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoI89ORF14190P |
| 14195 | PerC family transcriptional regulator | |||
| 17520 | DNA-binding transcriptional regulator Fis | |||
| 17525 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoI89ORF17525P |
| 17530 | DUF2556 family protein | |||
| 18310 | ribulose-phosphate 3-epimerase | |||
| 18315 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoI89DamP |
| 18320 | cell division protein DamX | |||
| 23200 | 527 aa hypothetical protein | |||
| 23205 | R | EcosS3ORF15775P (100% identity) | EcoI89ORF23210P | |
| 23210 | M | M.EcosS3ORF15775P (100% identity) | M.EcoI89ORF23210P | |
| 23215 | conjugal transfer protein TraG N-terminal | |||
| 23490 | 59 aa hypothetical protein | |||
| 23495 | R | Ecoi127aORF4076P (100% identity) | EcoI89ORF23495P | |
| 23500 | HNH endonuclease | |||
| 23965 | PerC family transcriptional regulator | |||
| 23970 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoI89ORF23970P |
| 23975 | LexA family transcriptional regulator | |||
| 24005 | 67 aa hypothetical protein | |||
| 24010 | M | M.Ecos142ORF20090P (100% identity) | M.EcoI89ORF24010P | |
| 24015 | phage lysis protein EssD | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13990 | DinI-like family protein | |||
| 13995 | R | EspFAAGmrSDP (100% identity) | EcoI89GmrSDP | |
| 14000 | recombinase family protein | |||
| 23745 | type I restriction-modification system | |||
| 23750 | R | EcosS1MrrP (100% identity) | EcoI89MrrP | |
| 23755 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6070 | recombination protein NinB | |||
| 6075 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoI89ORF6075P |
| 6080 | NinE family protein | |||