Escherichia coli THO-003 |
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Putative Escherichia coli THO-003 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 31386
| Sequence length: | GenBank #: | |
| Chromosome: | 5,255,588 bp | AP022525 |
| plasmid pTHO-003-1: | 123,467 bp | AP022526 |
REBASE acronym: EcoTHO003
Org_num: 45273
All begin THOESC003_, THOESC003_P
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 37820 | 260 aa hypothetical protein | |||
| 37830 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoTHO003ORF37840P |
| 37840 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoTHO003ORF37840P |
| 37850 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoTHO003ORF37840P |
| 37860 | 156 aa hypothetical protein | |||
| 41260 | 388 aa hypothetical protein | |||
| ??? | M | M.EcoZLWTORF20795P (100% identity) | RTACNNNNGTG | M.EcoTHO003ORF41270P |
| 41280 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoTHO003ORF41270P |
| 41290 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoTHO003ORF41270P |
| 41300 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3330 | cell division protein DamX | |||
| 3340 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoTHO003DamP |
| 3350 | ribulose-phosphate 3-epimerase | |||
| 4460 | 59 aa hypothetical protein | |||
| 4470 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoTHO003ORF4470P |
| 4480 | DNA-binding protein Fis | |||
| 11750 | 162 aa hypothetical protein | |||
| 11760 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoTHO003ORF11760P |
| 11770 | LexA family transcriptional regulator | |||
| 11840 | 67 aa hypothetical protein | |||
| 11850 | M | M.EcosR6ORF7985P (100% identity) | M.EcoTHO003ORF11850P | |
| 11860 | Lysis protein S homolog from lambdoid prophage | |||
| 12130 | 257 aa hypothetical protein | |||
| ??? | M | M.SflSTLE1ORF5615P (100% identity) | M.EcoTHO003ORF12140P | |
| 12150 | R | Sso8033ORF3755P (99% identity) | EcoTHO003ORF12140P | |
| 12160 | SsrA-binding protein | |||
| 19360 | phosphohydrolase | |||
| 19370 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoTHO003DcmP |
| 19380 | V | V.SflC32DcmP (74% identity) | V.EcoTHO003DcmP | |
| 19390 | inner membrane transporter YedA | |||
| 21100 | antitermination protein | |||
| 21110 | M | M2.EcosS3ORF2905P (100% identity) | M.EcoTHO003ORF21110P | |
| 21120 | R | R2.EcosS3ORF2905P (100% identity) | R1.EcoTHO003ORF21110P | |
| 21130 | R | R1.EcosS3ORF2905P (100% identity) | R2.EcoTHO003ORF21110P | |
| 21140 | 65 aa hypothetical protein | |||
| 26780 | anti-adapter protein IraM | |||
| 26790 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoTHO003ORF26790P |
| 26800 | 65 aa hypothetical protein | |||
| 31200 | 118 aa hypothetical protein | |||
| 31210 | M | M.KpnYN1ORFGP (89% identity) | M.EcoTHO003ORF31210P | |
| 31220 | 71 aa hypothetical protein | |||
| 41920 | mcrBC 5-methylcytosine restriction system | |||
| 41930 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoTHO003ORF41940P |
| 41940 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoTHO003ORF41940P |
| 41950 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoTHO003ORF41940P |
| 41960 | 141 aa hypothetical protein | |||
| 44480 | 555 aa hypothetical protein | |||
| 44490 | R | EcosS3ORF15775P (98% identity) | EcoTHO003ORF44500P | |
| 44500 | M | M.EcosS3ORF15775P (100% identity) | M.EcoTHO003ORF44500P | |
| 44510 | 118 aa hypothetical protein | |||
| plasmid pTHO-003-1 | ||||
| 10700 | 308 aa hypothetical protein | |||
| 10710 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoTHO003ORF10710P | |
| 10720 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 41900 | 84 aa hypothetical protein | |||
| 41910 | R | EcosS3McrBP (100% identity) | EcoTHO003McrBP | |
| 41920 | R | EcosS9McrCP (100% identity) | EcoTHO003McrCP | |
| 41930 | 579 aa hypothetical protein | |||